ReadArtificialSAMfile(art,
compareList,
RefArray,
readdic)
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Function for reading a complete ReferenceFile into Memory.
- Parameters:
art (string) - artificial file.
RefArray (array) - Results from reading the reference SAM file.
compareList (list) - list containt 1s, where there is a difference in the genomes and
0s where the nucleotides are equal.
readdic (dictionary) - dictionary containing read ids and read qualities.
- Returns: dictionary
- aligned read objects from the artificial reference, which where
uniquely aligned.
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