libpappsomspp
Library for mass spectrometry
pappso::TimsMsRunReaderMs2Selected Member List

This is the complete list of members for pappso::TimsMsRunReaderMs2Selected, including all inherited members.

accept(const QString &file_name) const overridepappso::TimsMsRunReaderMs2Selectedprotectedvirtual
acquireDevice() overridepappso::TimsMsRunReaderMs2virtual
getMsRunId() constpappso::MsRunReader
getPrecursorsIDFromMzRt(int charge, double mz_val, double rt_sec, double k0)pappso::TimsMsRunReaderMs2virtual
getRetentionTimeLine() overridepappso::TimsMsRunReaderMs2virtual
getTicChromatogram() overridepappso::TimsMsRunReaderMs2virtual
getTimsDataSPtr()pappso::TimsMsRunReaderMs2virtual
hasScanNumbers() const overridepappso::TimsMsRunReaderMs2Selectedvirtual
initialize() overridepappso::TimsMsRunReaderMs2Selectedprotectedvirtual
isMonoThread() constpappso::MsRunReader
m_builtinMs2Centroidpappso::TimsMsRunReaderMs2private
m_isMonoThreadpappso::MsRunReaderprivate
massSpectrumCstSPtr(std::size_t spectrum_index) overridepappso::TimsMsRunReaderMs2Selectedvirtual
massSpectrumSPtr(std::size_t spectrum_index) overridepappso::TimsMsRunReaderMs2Selectedvirtual
mcsp_msRunIdpappso::MsRunReaderprotected
mpa_multiMapScanNumberpappso::MsRunReaderprotected
mpa_timsDatapappso::TimsMsRunReaderMs2Selectedprivate
MsFileAccessor classpappso::TimsMsRunReaderMs2Selectedfriend
msp_ms1Filterpappso::TimsMsRunReaderMs2private
msp_ms2Filterpappso::TimsMsRunReaderMs2private
msp_timsDatapappso::TimsMsRunReaderMs2private
MsRunReader(MsRunIdCstSPtr &ms_run_id)pappso::MsRunReader
MsRunReader(const MsRunReader &other)pappso::MsRunReader
newXicCoordSPtrFromQualifiedMassSpectrum(const pappso::QualifiedMassSpectrum &mass_spectrum, pappso::PrecisionPtr precision) const overridepappso::TimsMsRunReaderMs2virtual
newXicCoordSPtrFromSpectrumIndex(std::size_t spectrum_index, pappso::PrecisionPtr precision) const overridepappso::TimsMsRunReaderMs2virtual
qualifiedMassSpectrum(std::size_t spectrum_index, bool want_binary_data=true) const overridepappso::TimsMsRunReaderMs2Selectedvirtual
readSpectrumCollection(SpectrumCollectionHandlerInterface &handler) overridepappso::TimsMsRunReaderMs2Selectedvirtual
readSpectrumCollectionByMsLevel(SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) overridepappso::TimsMsRunReaderMs2virtual
releaseDevice() overridepappso::TimsMsRunReaderMs2virtual
scanNumber2SpectrumIndex(std::size_t scan_number)pappso::MsRunReadervirtual
setMonoThread(bool is_mono_thread)pappso::MsRunReader
setMs1FilterCstSPtr(pappso::FilterInterfaceCstSPtr filter)pappso::TimsMsRunReaderMs2Selected
setMs2BuiltinCentroid(bool centroid)pappso::TimsMsRunReaderMs2
setMs2FilterCstSPtr(pappso::FilterInterfaceCstSPtr filter)pappso::TimsMsRunReaderMs2Selected
spectrumListSize() const overridepappso::TimsMsRunReaderMs2Selectedvirtual
TimsMsRunReaderMs2(MsRunIdCstSPtr &msrun_id_csp)pappso::TimsMsRunReaderMs2
TimsMsRunReaderMs2Selected(MsRunIdCstSPtr &msrun_id_csp)pappso::TimsMsRunReaderMs2Selected
~MsRunReader()pappso::MsRunReadervirtual
~TimsMsRunReaderMs2()pappso::TimsMsRunReaderMs2virtual
~TimsMsRunReaderMs2Selected()pappso::TimsMsRunReaderMs2Selectedvirtual