libpappsomspp
Library for mass spectrometry
- s -
sanityCheck() :
pappso::Enzyme
savePdf() :
pappso::MassSpectrumWidget
SavGolParams() :
pappso::SavGolParams
scanNumber2SpectrumIndex() :
pappso::MsRunReader
SelectionPolygon() :
pappso::SelectionPolygon
SelectionPolygonSpec() :
pappso::SelectionPolygonSpec
selectMsRunReader() :
pappso::TimsMsFileReader
,
pappso::XyMsFileReader
serializeMsRun() :
pappso::MsRunXicExtractorDisk
set() :
pappso::GrpMapPeptideToGroup
set1D() :
pappso::SelectionPolygon
set2D() :
pappso::SelectionPolygon
setAccession() :
pappso::Protein
setAccumulationTime() :
pappso::TimsFrameBase
setAlignedRetentionTimeVector() :
pappso::MsRunRetentionTime< T >
setApplyMzShift() :
pappso::MzIntegrationParams
setArea() :
pappso::TracePeak
setAxisLabelX() :
pappso::BasePlotWidget
setAxisLabelY() :
pappso::BasePlotWidget
setBinningType() :
pappso::MzIntegrationParams
setBins() :
pappso::MassSpectrumCombiner
setChargeMinimalFractionalPart() :
pappso::MassSpecTracePlotWidget
setChargeStateEnvelopePeakSpan() :
pappso::MassSpecTracePlotWidget
setColorMapPlotConfig() :
pappso::BaseColorMapPlotWidget
setCurrentIndex() :
pappso::PrecisionWidget
setDaltonValueChanged() :
pappso::PrecisionWidget
setDecimalPlaces() :
pappso::MassDataCombinerInterface
,
pappso::MzIntegrationParams
setDescription() :
pappso::Protein
setDetectionThresholdOnMaxmin() :
pappso::TraceDetectionZivy
setDetectionThresholdOnMinmax() :
pappso::TraceDetectionZivy
setDiffFormula() :
pappso::AaModification
setDtInMilliSeconds() :
pappso::QualifiedMassSpectrum
setDynamicRange() :
pappso::XtandemSpectrumProcess
setEmptyMassSpectrum() :
pappso::QualifiedMassSpectrum
setExcludeParent() :
pappso::XtandemSpectrumProcess
setExcludeParentNeutralLoss() :
pappso::XtandemSpectrumProcess
setFileName() :
pappso::MsRunId
setFilterMorphoMaxMin() :
pappso::TraceDetectionZivy
setFilterMorphoMean() :
pappso::TraceDetectionMoulon
,
pappso::TraceDetectionZivy
setFilterMorphoMinMax() :
pappso::TraceDetectionZivy
setFocus() :
pappso::BasePlotWidget
setFocusSignal() :
pappso::BasePlotWidget
setGraphData() :
pappso::BaseTracePlotWidget
setGreatestMz() :
pappso::MzIntegrationParams
setGroupNumber() :
pappso::GrpGroup
,
pappso::GrpPeptide
,
pappso::GrpPeptideSet
,
pappso::GrpProtein
,
pappso::GrpSubGroup
setGrpPeptide() :
pappso::GrpExperiment
setInputParameters() :
pappso::WrapTandemResults
setInternalCterModification() :
pappso::Peptide
setInternalNterModification() :
pappso::Peptide
setIonList() :
pappso::MassSpectrumWidget
setIonScore() :
pappso::XtandemSpectrumProcess
setLeftBoundary() :
pappso::TracePeak
setMassSpectrumCstSPtr() :
pappso::MassSpectrumWidget
setMassSpectrumId() :
pappso::QualifiedMassSpectrum
setMassSpectrumSPtr() :
pappso::QualifiedMassSpectrum
setMaximumIsotopeNumber() :
pappso::MassSpectrumWidget
setMaximumIsotopeRank() :
pappso::MassSpectrumWidget
setMaxNumberMod() :
pappso::PeptideVariableModificationBuilder
setMaxPeptideVariantListSize() :
pappso::Enzyme
setMaxXicElement() :
pappso::TracePeak
setMinimumMz() :
pappso::XtandemSpectrumProcess
setMinNumberMod() :
pappso::PeptideVariableModificationBuilder
setMiscleavage() :
pappso::Enzyme
setModificationCounter() :
pappso::PeptideVariableModificationBuilder
setModificationPattern() :
pappso::PeptideModificatorBase
setMonoThread() :
pappso::MsRunReader
,
pappso::TimsData
setMs1FilterCstSPtr() :
pappso::TimsData
,
pappso::TimsMsRunReaderMs2
,
pappso::TimsMsRunReaderMs2Selected
setMs1MeanFilter() :
pappso::MsRunRetentionTime< T >
setMs1Precision() :
pappso::MassSpectrumWidget
setMs2BuiltinCentroid() :
pappso::TimsData
,
pappso::TimsMsRunReaderMs2
setMs2FilterCstSPtr() :
pappso::TimsData
,
pappso::TimsMsRunReaderMs2
,
pappso::TimsMsRunReaderMs2Selected
setMs2MeanFilter() :
pappso::MsRunRetentionTime< T >
setMs2MedianFilter() :
pappso::MsRunRetentionTime< T >
setMs2Precision() :
pappso::MassSpectrumWidget
setMsLevel() :
pappso::MassSpectrumWidget
,
pappso::QualifiedMassSpectrum
setMsMsType() :
pappso::TimsFrameBase
setMsRunId() :
pappso::MassSpectrumId
setMsRunXicExtractorFactoryType() :
pappso::MsRunXicExtractorFactory
setMzCalibration() :
pappso::TimsFrameBase
setMzCalibrationInterfaceSPtr() :
pappso::TimsFrameBase
setMzFormat() :
pappso::MsRunId
setMzRangeChanged() :
pappso::QCPSpectrum
setMzShift() :
pappso::MzIntegrationParams
setMzTarget() :
pappso::OboChooserWidget
setName() :
pappso::QCPXic
,
pappso::XicWidget
setNativeId() :
pappso::MassSpectrumId
setNeedMsLevelPeakList() :
pappso::SpectrumCollectionHandlerInterface
setNeutralLossMass() :
pappso::XtandemSpectrumProcess
setNeutralLossWindowDalton() :
pappso::XtandemSpectrumProcess
setNmostIntense() :
pappso::XtandemSpectrumProcess
setNodesToProcessCount() :
pappso::MsRunDataSetTreeNodeVisitorInterface
setOboPsiModTerm() :
pappso::FilterOboPsiModSink
,
pappso::FilterOboPsiModTermAccession
,
pappso::FilterOboPsiModTermDiffMono
,
pappso::FilterOboPsiModTermLabel
,
pappso::FilterOboPsiModTermName
,
pappso::OboListModel::OboPsiModHandler
,
pappso::OboPsiModHandlerInterface
setOrigAndLastMaxZValue() :
pappso::ColorMapPlotConfig
setOrigAndLastMinZValue() :
pappso::ColorMapPlotConfig
setOrigMaxZValue() :
pappso::ColorMapPlotConfig
setOrigMinZValue() :
pappso::ColorMapPlotConfig
setParameterValue() :
pappso::QualifiedMassSpectrum
setParent() :
pappso::MsRunDataSetTreeNode
setPen() :
pappso::BasePlotWidget
setPeptide() :
pappso::EnzymeProductInterface
,
pappso::PeptideBuilder
,
pappso::PeptideMethioninRemove
,
pappso::PeptideModificatorPipeline
,
pappso::PeptideSemiEnzyme
,
pappso::PeptideSizeFilter
setPeptideCharge() :
pappso::MassSpectrumWidget
setPeptideSp() :
pappso::MassSpectrumWidget
,
pappso::PeptideFixedModificationBuilder
,
pappso::PeptideModificatorInterface
,
pappso::PeptideModificatorPipeline
,
pappso::PeptideModificatorTee
,
pappso::PeptideVariableModificationBuilder
,
pappso::PeptideVariableModificationReplacement
setPeptideSpectrumCharge() :
pappso::PsmFeatures
setPlottingColor() :
pappso::BaseColorMapPlotWidget
,
pappso::BasePlotWidget
setPoint() :
pappso::SelectionPolygon
setPostExtractionTraceFilterCstSPtr() :
pappso::MsRunXicExtractorInterface
setPpmValueChanged() :
pappso::PrecisionWidget
setPrecision() :
pappso::MzIntegrationParams
,
pappso::OboChooserWidget
,
pappso::PrecisionWidget
setPrecursorNativeId() :
pappso::QualifiedMassSpectrum
setPrecursorSpectrumIndex() :
pappso::QualifiedMassSpectrum
setPreferedFileReaderType() :
pappso::MsFileAccessor
setProtCter() :
pappso::PeptideFixedModificationBuilder
,
pappso::PeptideVariableModificationBuilder
setProtElse() :
pappso::PeptideFixedModificationBuilder
,
pappso::PeptideVariableModificationBuilder
setProtNter() :
pappso::PeptideFixedModificationBuilder
,
pappso::PeptideVariableModificationBuilder
setQualifiedMassSpectrum() :
pappso::MassSpectrumWidget
,
pappso::MsRunDataSetTreeNode
,
pappso::MsRunReaderRetentionTimeLine
,
pappso::MsRunReaderScanNumberMultiMap
,
pappso::MsRunReaderTicChromatogram
,
pappso::MsRunSimpleStatistics
,
pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints
,
pappso::MzxmlOutput::Translater
,
pappso::SpectrumCollectionHandlerInterface
setRank() :
pappso::GrpPeptide
,
pappso::GrpProtein
setReadAhead() :
pappso::MzxmlOutput
,
pappso::SpectrumCollectionHandlerInterface
setRefineSpectrumModel() :
pappso::XtandemSpectrumProcess
setRemoveIsotope() :
pappso::XtandemSpectrumProcess
setRemoveNonInformativeSubgroups() :
pappso::GrpExperiment
setRemoveZeroValDataPoints() :
pappso::MzIntegrationParams
setResValueChanged() :
pappso::PrecisionWidget
setRetentionTimeAroundTarget() :
pappso::MsRunXicExtractorInterface
setRetentionTimeInMinutes() :
pappso::XicWidget
setRetentionTimeInSeconds() :
pappso::XicWidget
setRightBoundary() :
pappso::TracePeak
setRtInSeconds() :
pappso::QualifiedMassSpectrum
setRtRangeChanged() :
pappso::QCPXic
setRunId() :
pappso::MsRunId
setSampleName() :
pappso::MsRunId
setSequence() :
pappso::FastaHandlerInterface
,
pappso::Protein
setSink() :
pappso::PeptideBuilder
,
pappso::PeptideFixedModificationBuilder
,
pappso::PeptideMethioninRemove
,
pappso::PeptideModificatorPipeline
,
pappso::PeptideSemiEnzyme
,
pappso::PeptideSinkInterface
,
pappso::PeptideSizeFilter
,
pappso::PeptideSpSinkInterface
,
pappso::PeptideVariableModificationBuilder
setSize() :
pappso::MsRunSlice
setSliceNumber() :
pappso::MsRunSlice
setSmallestMz() :
pappso::MzIntegrationParams
setSpectrum() :
pappso::MsRunSlice
setSpectrumIndex() :
pappso::MassSpectrumId
setSpectrumP() :
pappso::QCPSpectrum
setStatus() :
pappso::UiMonitorInterface
,
pappso::UiMonitorText
,
pappso::UiMonitorVoid
setSubGroupNumber() :
pappso::GrpProtein
,
pappso::GrpSubGroup
setSwitchValue() :
pappso::SwitchWidget
setTakeOnlyFirstWildcard() :
pappso::Enzyme
setTandemBinaryPath() :
pappso::TandemWrapperRun
setText() :
pappso::HttpButton
setTicStart() :
pappso::TraceDetectionMoulon
setTicStop() :
pappso::TraceDetectionMoulon
setTime() :
pappso::TimsFrameBase
setTimsCalibration() :
pappso::TimsFrameBase
setTitle() :
pappso::UiMonitorInterface
,
pappso::UiMonitorText
,
pappso::UiMonitorVoid
setTmpDir() :
pappso::MsRunXicExtractorFactory
setTotalSteps() :
pappso::UiMonitorInterface
,
pappso::UiMonitorText
,
pappso::UiMonitorTextPercent
,
pappso::UiMonitorVoid
setTracePeak() :
pappso::TraceDetectionSinkInterface
,
pappso::TracePeakList
setTriangleSlope() :
pappso::FilterTriangle
setupWidget() :
pappso::BasePlotWidget
setVisibleMassDelta() :
pappso::MassSpectrumWidget
setXicExtractMethod() :
pappso::MsRunXicExtractorInterface
setXmlId() :
pappso::MsRunId
setXrefOrigin() :
pappso::AaModification
sgcoeff() :
pappso::FilterSavitzkyGolay
shouldIstop() :
pappso::UiMonitorInterface
,
pappso::UiMonitorText
,
pappso::UiMonitorVoid
shouldStop() :
pappso::MsRunDataSetTreeNodeVisitorInterface
,
pappso::SpectrumCollectionHandlerInterface
showTracers() :
pappso::BasePlotWidget
size() :
pappso::FilterOboPsiModSink
,
pappso::GrpMapPeptideToSubGroupSet
,
pappso::GrpPeptideSet
,
pappso::GrpSubGroupSet
,
pappso::MsRunDataSetTree
,
pappso::MsRunDataSetTreeNode
,
pappso::MsRunSlice
,
pappso::Peptide
,
pappso::PeptideFragment
,
pappso::PeptideFragmentIon
,
pappso::PeptideFragmentIonListBase
,
pappso::PeptideInterface
,
pappso::PeptideIsotopeSpectrumMatch
,
pappso::PeptideNaturalIsotope
,
pappso::PeptideNaturalIsotopeList
,
pappso::PeptideSpectrumMatch
,
pappso::Protein
,
pappso::QualifiedMassSpectrum
sortByRetentionTime() :
pappso::Xic
sortMz() :
pappso::MassSpectrum
sortX() :
pappso::Trace
sortY() :
pappso::Trace
spaceKeyReleaseEvent() :
pappso::BasePlotWidget
spectrumListHasSize() :
pappso::SpectrumCollectionHandlerInterface
spectrumListSize() :
pappso::MsRunReader
,
pappso::PwizMsRunReader
,
pappso::TimsFramesMsRunReader
,
pappso::TimsMsRunReader
,
pappso::TimsMsRunReaderMs2
,
pappso::TimsMsRunReaderMs2Selected
,
pappso::XyMsRunReader
splitMzStringToDoubleVectorWithSpaces() :
pappso::Utils
splitSizetStringToSizetVectorWithSpaces() :
pappso::Utils
startGrouping() :
pappso::GrpExperiment
,
pappso::GrpGroupingMonitor
,
pappso::GrpGroupingMonitorInterface
startLinearRead() :
pappso::TimsBinDec
startNumberingAllGroups() :
pappso::GrpGroupingMonitor
,
pappso::GrpGroupingMonitorInterface
startRemovingNonInformativeSubGroupsInAllGroups() :
pappso::GrpGroupingMonitor
,
pappso::GrpGroupingMonitorInterface
stopGrouping() :
pappso::GrpGroupingMonitor
,
pappso::GrpGroupingMonitorInterface
stopRemovingNonInformativeSubGroupsInAllGroups() :
pappso::GrpGroupingMonitor
,
pappso::GrpGroupingMonitorInterface
storeSlices() :
pappso::MsRunXicExtractorDisk
,
pappso::MsRunXicExtractorDiskBuffer
strip() :
pappso::GrpProtein
sumAndRemove() :
pappso::FilterTriangle
sumY() :
pappso::Trace
SwitchWidget() :
pappso::SwitchWidget
Generated on Sun Jan 1 2023 15:24:07 for libpappsomspp by
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