libpappsomspp
Library for mass spectrometry
peptidemethioninremove.h
Go to the documentation of this file.
1 
2 /*******************************************************************************
3  * Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 
25 #pragma once
26 
27 #include "enzymeproductinterface.h"
28 
29 
30 namespace pappso
31 {
32 /** \brief potential remove Nter Methionin
33  * */
36 {
37  private:
38  EnzymeProductInterface *m_sink = nullptr;
39  bool m_isPotential = true;
40 
41  public:
42  PeptideMethioninRemove(bool ism_isPotential);
43  virtual ~PeptideMethioninRemove();
44 
45  // EnzymeProductInterface
46  void setPeptide(std::int8_t sequence_database_id,
47  const ProteinSp &protein_sp,
48  bool is_decoy,
49  const QString &peptide,
50  unsigned int start,
51  bool is_nter,
52  unsigned int missed_cleavage_number,
53  bool semi_enzyme) override;
54 
55  // PeptideSinkInterface
56  void
58  {
59  m_sink = sink;
60  };
61 };
62 } // namespace pappso
potential remove Nter Methionin
void setSink(EnzymeProductInterface *sink) override
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition: protein.h:43