libpappsomspp
Library for mass spectrometry
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#include <timsmsfilereader.h>
Public Member Functions | |
TimsMsFileReader (const QString &file_name) | |
virtual | ~TimsMsFileReader () |
virtual MzFormat | getFileFormat () override |
virtual std::vector< MsRunIdCstSPtr > | getMsRunIds (const QString &run_prefix) override |
MsRunReader * | selectMsRunReader (const QString &file_name) const |
Private Member Functions | |
virtual std::size_t | initialize () |
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MsFileReader (const QString &file_name) | |
virtual | ~MsFileReader () |
Additional Inherited Members | |
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QString | m_fileName |
MzFormat | m_fileFormat = MzFormat::unknown |
Definition at line 41 of file timsmsfilereader.h.
pappso::TimsMsFileReader::TimsMsFileReader | ( | const QString & | file_name | ) |
Definition at line 39 of file timsmsfilereader.cpp.
References initialize(), and pappso::MsFileReader::m_fileName.
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virtual |
Definition at line 47 of file timsmsfilereader.cpp.
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overridevirtual |
Implements pappso::MsFileReader.
Definition at line 80 of file timsmsfilereader.cpp.
References pappso::MsFileReader::m_fileFormat.
Referenced by pappso::MsFileAccessor::buildTimsMsRunReaderMs2SPtr(), and pappso::MsFileAccessor::getMsRunIds().
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overridevirtual |
Implements pappso::MsFileReader.
Definition at line 87 of file timsmsfilereader.cpp.
References initialize(), pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, pappso::MsRunId::setMzFormat(), pappso::MsRunId::setRunId(), pappso::MsRunId::setSampleName(), pappso::MsRunId::setXmlId(), and pappso::MsRunId::toString().
Referenced by pappso::MsFileAccessor::buildTimsMsRunReaderMs2SPtr(), and pappso::MsFileAccessor::getMsRunIds().
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privatevirtual |
Definition at line 53 of file timsmsfilereader.cpp.
References pappso::brukerTims, pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, pappso::PappsoException::qwhat(), and pappso::unknown.
Referenced by TimsMsFileReader(), and getMsRunIds().
MsRunReader* pappso::TimsMsFileReader::selectMsRunReader | ( | const QString & | file_name | ) | const |