libpappsomspp
Library for mass spectrometry
fastareader.h
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1 
2 /*******************************************************************************
3  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  ******************************************************************************/
21 
22 #pragma once
23 
24 #include <QIODevice>
25 #include <QFile>
26 #include <QTextStream>
27 #include "fastahandlerinterface.h"
28 
29 namespace pappso
30 {
31 class FastaFileIndexer;
32 
34 {
36 
37  public:
39  ~FastaReader();
40 
41  void parse(QFile &fastaFile);
42  void parse(QIODevice *p_inputstream);
43 
44  protected:
45  void parseOnlyOne(QTextStream &p_in);
46 
47  private:
49 };
50 } // namespace pappso
FastaHandlerInterface & m_handler
Definition: fastareader.h:48
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39