libpappsomspp
Library for mass spectrometry
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#include <xymsfilereader.h>
Public Member Functions | |
XyMsFileReader (const QString &file_name) | |
virtual | ~XyMsFileReader () |
virtual MzFormat | getFileFormat () override |
virtual std::vector< MsRunIdCstSPtr > | getMsRunIds (const QString &run_prefix) override |
MsRunReader * | selectMsRunReader (const QString &file_name) const |
Private Member Functions | |
virtual std::size_t | initialize () |
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MsFileReader (const QString &file_name) | |
virtual | ~MsFileReader () |
Additional Inherited Members | |
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QString | m_fileName |
MzFormat | m_fileFormat = MzFormat::unknown |
Definition at line 17 of file xymsfilereader.h.
pappso::XyMsFileReader::XyMsFileReader | ( | const QString & | file_name | ) |
Definition at line 28 of file xymsfilereader.cpp.
References initialize().
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virtual |
Definition at line 35 of file xymsfilereader.cpp.
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overridevirtual |
Implements pappso::MsFileReader.
Definition at line 99 of file xymsfilereader.cpp.
References pappso::MsFileReader::m_fileFormat.
Referenced by pappso::MsFileAccessor::getMsRunIds().
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overridevirtual |
Implements pappso::MsFileReader.
Definition at line 106 of file xymsfilereader.cpp.
References pappso::Utils::getLexicalOrderedString(), pappso::MsRunId::getRunId(), initialize(), pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, pappso::MsRunId::setMzFormat(), pappso::MsRunId::setRunId(), pappso::MsRunId::setSampleName(), and pappso::MsRunId::setXmlId().
Referenced by pappso::MsFileAccessor::getMsRunIds().
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privatevirtual |
Definition at line 41 of file xymsfilereader.cpp.
References pappso::Utils::endOfLineRegExp, pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, pappso::unknown, pappso::xy, and pappso::Utils::xyMassDataFormatRegExp.
Referenced by XyMsFileReader(), and getMsRunIds().
MsRunReader* pappso::XyMsFileReader::selectMsRunReader | ( | const QString & | file_name | ) | const |