libpappsomspp
Library for mass spectrometry
grppeptideset.h
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1 
2 /*******************************************************************************
3  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <olivier.langella@u-psud.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 #pragma once
25 
26 #include <list>
27 
28 #include "grpprotein.h"
29 
30 namespace pappso
31 {
32 
33 class GrpMapPeptideToSubGroupSet;
34 
36 {
38  friend class GrpMapPeptideToGroup;
39 
40  private:
41  std::list<GrpPeptide *> m_peptidePtrList;
42 
43  bool privContainsAll(const GrpPeptideSet &peptideSetIn) const;
44 
45  public:
46  GrpPeptideSet();
47  GrpPeptideSet(const GrpPeptideSet &other);
48  GrpPeptideSet(const GrpProtein *p_protein);
50  GrpPeptideSet &operator=(const GrpPeptideSet &other);
51  bool operator==(const GrpPeptideSet &other) const;
52 
53  unsigned int
54  size() const
55  {
56  return m_peptidePtrList.size();
57  };
58  bool biggerAndContainsAll(const GrpPeptideSet &peptideSet) const;
59  bool contains(const GrpPeptide *p_grp_peptide) const;
60  bool containsAll(const GrpPeptideSet &peptideSet) const;
61  bool containsAny(const GrpPeptideSet &peptideSet) const;
62  void addAll(const GrpPeptideSet &peptideSet);
63  const QString printInfos() const;
64 
65  void numbering();
66  void setGroupNumber(unsigned int i);
67 
68  std::vector<const GrpPeptide *> getGrpPeptideList() const;
69 };
70 } // namespace pappso
std::list< GrpPeptide * > m_peptidePtrList
Definition: grppeptideset.h:41
unsigned int size() const
Definition: grppeptideset.h:54
const QString printInfos() const
void addAll(const GrpPeptideSet &peptideSet)
std::vector< const GrpPeptide * > getGrpPeptideList() const
bool operator==(const GrpPeptideSet &other) const
bool containsAny(const GrpPeptideSet &peptideSet) const
void setGroupNumber(unsigned int i)
GrpPeptideSet & operator=(const GrpPeptideSet &other)
bool biggerAndContainsAll(const GrpPeptideSet &peptideSet) const
bool contains(const GrpPeptide *p_grp_peptide) const
bool privContainsAll(const GrpPeptideSet &peptideSetIn) const
bool containsAll(const GrpPeptideSet &peptideSet) const
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39