libpappsomspp
Library for mass spectrometry
pappso::MapTrace Class Reference

#include <maptrace.h>

Inheritance diagram for pappso::MapTrace:

Public Member Functions

 MapTrace ()
 
 MapTrace (const std::vector< std::pair< pappso_double, pappso_double >> &dataPoints)
 
 MapTrace (const std::vector< DataPoint > &dataPoints)
 
 MapTrace (const MapTrace &other)
 
 MapTrace (const Trace &trace)
 
virtual ~MapTrace ()
 
size_t initialize (const std::vector< pappso_double > &xVector, const std::vector< pappso_double > &yVector)
 
size_t initialize (const std::map< pappso_double, pappso_double > &map)
 
virtual MapTraceoperator= (const MapTrace &other)
 
MapTraceSPtr makeMapTraceSPtr () const
 
MapTraceCstSPtr makeMapTraceCstSPtr () const
 
std::vector< pappso_doublexValues ()
 
std::vector< pappso_doubleyValues ()
 
void insertOrUpdate (const DataPoint &data_point)
 
void insertOrUpdate (const Trace &trace)
 
Trace toTrace () const
 
QString toString () const
 

Detailed Description

Definition at line 33 of file maptrace.h.

Constructor & Destructor Documentation

◆ MapTrace() [1/5]

pappso::MapTrace::MapTrace ( )

Definition at line 31 of file maptrace.cpp.

32 {
33 }

◆ MapTrace() [2/5]

pappso::MapTrace::MapTrace ( const std::vector< std::pair< pappso_double, pappso_double >> &  dataPoints)

Definition at line 36 of file maptrace.cpp.

38 {
39  for(auto &dataPoint : dataPoints)
40  {
41  insert(dataPoint);
42  }
43 }

◆ MapTrace() [3/5]

pappso::MapTrace::MapTrace ( const std::vector< DataPoint > &  dataPoints)

Definition at line 46 of file maptrace.cpp.

47 {
48  for(auto &dataPoint : dataPoints)
49  {
50  insert(std::pair<pappso_double, pappso_double>(dataPoint.x, dataPoint.y));
51  }
52 }

◆ MapTrace() [4/5]

pappso::MapTrace::MapTrace ( const MapTrace other)

Definition at line 55 of file maptrace.cpp.

56  : std::map<pappso_double, pappso_double>(other)
57 {
58 }

◆ MapTrace() [5/5]

pappso::MapTrace::MapTrace ( const Trace trace)

Definition at line 61 of file maptrace.cpp.

62 {
63  // qDebug() << __FILE__ << "@" << __LINE__ << __FUNCTION__ << " ()";
64 
65  for(auto &dataPoint : trace)
66  {
67  // std::cout << __FILE__ << " @ " << __LINE__ << " " << __FUNCTION__ << "
68  // () "
69  //<< std::setprecision(15)
70  //<< "Current data point: " << dataPoint.toString().toStdString() <<
71  // std::endl;
72 
73  insert(std::pair<pappso_double, pappso_double>(dataPoint.x, dataPoint.y));
74  }
75 
76  // qDebug() << __FILE__ << "@" << __LINE__ << __FUNCTION__ << " ()"
77  //<< "After construction, map size: " << size();
78 }

◆ ~MapTrace()

pappso::MapTrace::~MapTrace ( )
virtual

Definition at line 81 of file maptrace.cpp.

82 {
83  // Calls the destructor for each DataPoint object in the vector.
84  clear();
85 }

Member Function Documentation

◆ initialize() [1/2]

size_t pappso::MapTrace::initialize ( const std::map< pappso_double, pappso_double > &  map)

Definition at line 115 of file maptrace.cpp.

116 {
117 
118  // Clear *this, because initialize supposes that *this will be identical to
119  // map.
120 
121  clear();
122 
123  for(auto &&pair : map)
124  {
125  insert(pair);
126  }
127 
128  return size();
129 }

◆ initialize() [2/2]

size_t pappso::MapTrace::initialize ( const std::vector< pappso_double > &  xVector,
const std::vector< pappso_double > &  yVector 
)

Definition at line 89 of file maptrace.cpp.

91 {
92  // Clear *this, because initialize supposes that *this will contain only the
93  // data in the vectors.
94 
95  clear();
96 
97  // Sanity check
98  if(xVector.size() != yVector.size())
99  throw ExceptionNotPossible(
100  QObject::tr("Fatal error at msrundatasettreenode.cpp "
101  "-- ERROR xVector and yVector must have the same size."
102  "Program aborted."));
103 
104  for(std::size_t iter = 0; iter < xVector.size(); ++iter)
105  {
106  insert(std::pair<pappso_double, pappso_double>(xVector.at(iter),
107  yVector.at(iter)));
108  }
109 
110  return size();
111 }

◆ insertOrUpdate() [1/2]

void pappso::MapTrace::insertOrUpdate ( const DataPoint data_point)

Definition at line 192 of file maptrace.cpp.

193 {
194 
195  // Try to insert the data point into the map. Check if that was done or
196  // not.
197  std::pair<std::map<double, double>::iterator, bool> res =
198  insert(std::pair<double, double>(data_point.x, data_point.y));
199 
200  if(!res.second)
201  {
202  // One other same (x,y) value pair was seen already. Only increment the y
203  // value.
204 
205  res.first->second += data_point.y;
206  }
207 }

References pappso::res, pappso::DataPoint::x, and pappso::DataPoint::y.

Referenced by insertOrUpdate().

◆ insertOrUpdate() [2/2]

void pappso::MapTrace::insertOrUpdate ( const Trace trace)

Definition at line 211 of file maptrace.cpp.

212 {
213  for(const DataPoint &data_point : trace)
214  insertOrUpdate(data_point);
215 }
void insertOrUpdate(const DataPoint &data_point)
Definition: maptrace.cpp:192

References insertOrUpdate().

◆ makeMapTraceCstSPtr()

MapTraceCstSPtr pappso::MapTrace::makeMapTraceCstSPtr ( ) const

Definition at line 161 of file maptrace.cpp.

162 {
163  return std::make_shared<const MapTrace>(*this);
164 }

◆ makeMapTraceSPtr()

MapTraceSPtr pappso::MapTrace::makeMapTraceSPtr ( ) const

Definition at line 154 of file maptrace.cpp.

155 {
156  return std::make_shared<MapTrace>(*this);
157 }

◆ operator=()

MapTrace & pappso::MapTrace::operator= ( const MapTrace other)
virtual

Definition at line 133 of file maptrace.cpp.

134 {
135 
136  if(&other == this)
137  return *this;
138 
139  // Clear *this, because initialize supposes that *this will be identical to
140  // other.
141 
142  clear();
143 
144  for(auto &pair : other)
145  {
146  insert(pair);
147  }
148 
149  return *this;
150 }

◆ toString()

QString pappso::MapTrace::toString ( ) const

Definition at line 231 of file maptrace.cpp.

232 {
233  // Even if the spectrum is empty, we should return an empty string.
234  QString text;
235 
236  for(auto &&pair : *this)
237  {
238 // For debugging
239 #if 0
240 
241  QString new_data_point_text = QString("%1 %2\n")
242  .arg(pair.first, 0, 'f', 10)
243  .arg(pair.second, 0, 'f', 10);
244 
245  qDebug() << "new data point text:" << new_data_point_text;
246  text.append(new_data_point_text);
247 #endif
248 
249  text.append(QString("%1 %2\n")
250  .arg(pair.first, 0, 'f', 10)
251  .arg(pair.second, 0, 'f', 10));
252  }
253 
254  return text;
255 }

◆ toTrace()

Trace pappso::MapTrace::toTrace ( ) const

Definition at line 219 of file maptrace.cpp.

220 {
221  Trace trace;
222 
223  for(auto &&pair : *this)
224  trace.push_back(DataPoint(pair.first, pair.second));
225 
226  return trace;
227 }

Referenced by pappso::TraceMinusCombiner::combine(), pappso::TracePlusCombiner::combine(), pappso::MsRunReaderTicChromatogram::getTicChromatogram(), pappso::TimsData::getTicChromatogram(), and pappso::FilterLowIntensitySignalRemoval::reconstructTrace().

◆ xValues()

std::vector< pappso_double > pappso::MapTrace::xValues ( )

Definition at line 168 of file maptrace.cpp.

169 {
170  std::vector<pappso_double> vector;
171 
172  for(auto &&pair : *this)
173  vector.push_back(pair.first);
174 
175  return vector;
176 }

◆ yValues()

std::vector< pappso_double > pappso::MapTrace::yValues ( )

Definition at line 180 of file maptrace.cpp.

181 {
182  std::vector<pappso_double> vector;
183 
184  for(auto &&pair : *this)
185  vector.push_back(pair.second);
186 
187  return vector;
188 }

The documentation for this class was generated from the following files: