libpappsomspp
Library for mass spectrometry
grpmappeptidetosubgroupset.h
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1 /*******************************************************************************
2  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3  *
4  * This file is part of the PAPPSOms++ library.
5  *
6  * PAPPSOms++ is free software: you can redistribute it and/or modify
7  * it under the terms of the GNU General Public License as published by
8  * the Free Software Foundation, either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * PAPPSOms++ is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18  *
19  * Contributors:
20  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21  *implementation
22  ******************************************************************************/
23 
24 #pragma once
25 
26 #include <map>
27 
28 #include "grppeptide.h"
29 #include "grpsubgroupset.h"
30 #include "grppeptideset.h"
31 
32 namespace pappso
33 {
34 
35 
37 {
38  private:
39  std::map<GrpPeptide *, GrpSubGroupSet> m_mapPeptideToSubGroupSet;
40 
41  public:
45 
46  /** @brief get all subgroups concerned by a list of peptides
47  */
48  void getSubGroupSet(const GrpPeptideSet &peptide_set_in,
49  GrpSubGroupSet &impacted_subgroup_set) const;
50 
51  /** @brief removes in the map all references of the group to remove
52  * (p_remove_sub_group)
53  */
54  void remove(GrpSubGroup *p_remove_sub_group);
55 
56  /** @brief add in the map all peptides of the subgroup to add
57  */
58  void add(GrpSubGroup *p_add_sub_group);
59 
60  /** @brief tells if this subgroup contains a specific peptide
61  */
62  bool hasSpecificPeptide(const GrpSubGroup *get) const;
63 
64  /** @brief check function only usefull for testing purpose
65  */
66  void check(std::list<GrpSubGroupSp> &m_grpSubGroupSpList) const;
67 
68  unsigned int size() const;
69  const QString printInfos() const;
70 };
71 
72 } // namespace pappso
bool hasSpecificPeptide(const GrpSubGroup *get) const
tells if this subgroup contains a specific peptide
void check(std::list< GrpSubGroupSp > &m_grpSubGroupSpList) const
check function only usefull for testing purpose
void getSubGroupSet(const GrpPeptideSet &peptide_set_in, GrpSubGroupSet &impacted_subgroup_set) const
get all subgroups concerned by a list of peptides
void remove(GrpSubGroup *p_remove_sub_group)
removes in the map all references of the group to remove (p_remove_sub_group)
std::map< GrpPeptide *, GrpSubGroupSet > m_mapPeptideToSubGroupSet
void add(GrpSubGroup *p_add_sub_group)
add in the map all peptides of the subgroup to add
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39