libpappsomspp
Library for mass spectrometry
pappso::PwizMsRunReader Member List

This is the complete list of members for pappso::PwizMsRunReader, including all inherited members.

accept(const QString &file_name) const overridepappso::PwizMsRunReaderprotectedvirtual
acquireDevice() overridepappso::PwizMsRunReadervirtual
getMsRunId() constpappso::MsRunReader
getPwizSpectrumPtr(pwiz::msdata::SpectrumList *p_spectrum_list, std::size_t spectrum_index, bool want_binary_data) constpappso::PwizMsRunReaderprotected
getRetentionTimeLine()pappso::MsRunReadervirtual
getTicChromatogram()pappso::MsRunReadervirtual
hasScanNumbers() const overridepappso::PwizMsRunReadervirtual
initialize() overridepappso::PwizMsRunReaderprotectedvirtual
isMonoThread() constpappso::MsRunReader
m_hasScanNumberspappso::PwizMsRunReaderprivate
m_isMonoThreadpappso::MsRunReaderprivate
massSpectrumCstSPtr(std::size_t spectrum_index) overridepappso::PwizMsRunReadervirtual
massSpectrumSPtr(std::size_t spectrum_index) overridepappso::PwizMsRunReadervirtual
mcsp_msRunIdpappso::MsRunReaderprotected
mpa_multiMapScanNumberpappso::MsRunReaderprotected
MsFileAccessor classpappso::PwizMsRunReaderfriend
msp_msDatapappso::PwizMsRunReaderprotected
MsRunReader(MsRunIdCstSPtr &ms_run_id)pappso::MsRunReader
MsRunReader(const MsRunReader &other)pappso::MsRunReader
newXicCoordSPtrFromQualifiedMassSpectrum(const pappso::QualifiedMassSpectrum &mass_spectrum, pappso::PrecisionPtr precision) const overridepappso::PwizMsRunReadervirtual
newXicCoordSPtrFromSpectrumIndex(std::size_t spectrum_index, pappso::PrecisionPtr precision) const overridepappso::PwizMsRunReadervirtual
processDriftTime(pwiz::msdata::Spectrum *spectrum_p, QualifiedMassSpectrum &qualified_mass_spectrum) constpappso::PwizMsRunReaderprotected
processRetentionTime(pwiz::msdata::Spectrum *spectrum_p, QualifiedMassSpectrum &qualified_mass_spectrum) constpappso::PwizMsRunReaderprotected
PwizMsRunReader(MsRunIdCstSPtr &msrun_id_csp)pappso::PwizMsRunReader
qualifiedMassSpectrum(std::size_t spectrum_index, bool want_binary_data=true) const overridepappso::PwizMsRunReadervirtual
qualifiedMassSpectrumFromPwizMSData(std::size_t spectrum_index, bool want_binary_data, bool &ok) constpappso::PwizMsRunReaderprotected
qualifiedMassSpectrumFromPwizSpectrumPtr(const MassSpectrumId &massSpectrumId, pwiz::msdata::Spectrum *spectrum_p, bool want_binary_data, bool &ok) constpappso::PwizMsRunReaderprotected
readSpectrumCollection(SpectrumCollectionHandlerInterface &handler) overridepappso::PwizMsRunReadervirtual
readSpectrumCollectionByMsLevel(SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) overridepappso::PwizMsRunReadervirtual
releaseDevice() overridepappso::PwizMsRunReadervirtual
scanNumber2SpectrumIndex(std::size_t scan_number)pappso::MsRunReadervirtual
setMonoThread(bool is_mono_thread)pappso::MsRunReader
spectrumListSize() const overridepappso::PwizMsRunReadervirtual
~MsRunReader()pappso::MsRunReadervirtual
~PwizMsRunReader()pappso::PwizMsRunReadervirtual