libpappsomspp
Library for mass spectrometry
|
#include <pwizmsfilereader.h>
Public Member Functions | |
PwizMsFileReader (const QString &file_name) | |
virtual | ~PwizMsFileReader () |
virtual MzFormat | getFileFormat () override |
virtual std::vector< MsRunIdCstSPtr > | getMsRunIds (const QString &run_prefix) override |
Private Member Functions | |
virtual std::size_t | initialize () |
![]() | |
MsFileReader (const QString &file_name) | |
virtual | ~MsFileReader () |
Private Attributes | |
std::vector< pwiz::msdata::MSDataPtr > | m_msDataPtrVector |
![]() | |
QString | m_fileName |
MzFormat | m_fileFormat = MzFormat::unknown |
Definition at line 17 of file pwizmsfilereader.h.
pappso::PwizMsFileReader::PwizMsFileReader | ( | const QString & | file_name | ) |
Definition at line 28 of file pwizmsfilereader.cpp.
|
virtual |
Definition at line 34 of file pwizmsfilereader.cpp.
|
overridevirtual |
Implements pappso::MsFileReader.
Definition at line 163 of file pwizmsfilereader.cpp.
References pappso::MsFileReader::m_fileFormat.
Referenced by pappso::MsFileAccessor::getMsRunIds().
|
overridevirtual |
Implements pappso::MsFileReader.
Definition at line 174 of file pwizmsfilereader.cpp.
References pappso::Utils::getLexicalOrderedString(), initialize(), pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, m_msDataPtrVector, pappso::MsRunId::setMzFormat(), pappso::MsRunId::setSampleName(), and pappso::MsRunId::setXmlId().
Referenced by pappso::MsFileAccessor::getMsRunIds().
|
privatevirtual |
Definition at line 40 of file pwizmsfilereader.cpp.
References pappso::abSciexT2D, pappso::abSciexWiff, pappso::agilentMassHunter, pappso::brukerBaf, pappso::brukerFid, pappso::brukerYep, pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, m_msDataPtrVector, pappso::MGF, pappso::msn, pappso::mz5, pappso::mzML, pappso::mzXML, pappso::thermoRaw, pappso::Utils::toUtf8StandardString(), pappso::unknown, and pappso::watersRaw.
Referenced by getMsRunIds().
|
private |
Definition at line 20 of file pwizmsfilereader.h.
Referenced by getMsRunIds(), and initialize().