libpappsomspp
Library for mass spectrometry
tracedetectioninterface.h
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1 
2 /*******************************************************************************
3  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 
25 #pragma once
26 
27 #include "tracepeak.h"
28 
29 namespace pappso
30 {
31 class TraceDetectionInterface;
32 
33 typedef std::shared_ptr<TraceDetectionInterface> TraceDetectionInterfaceSPtr;
34 typedef std::shared_ptr<const TraceDetectionInterface>
36 
38 {
39  public:
40  virtual void setTracePeak(TracePeak &xic_peak) = 0;
41 };
42 
44 {
45  public:
46  /** @brief detect peaks on a trace
47  * @param trace the trace to detect peaks on
48  * @param sink the object to store peaks or stream it
49  * @param remove_peak_base if true, removes the area under the base of the
50  * peak
51  */
52  virtual void detect(const Trace &trace,
54  bool remove_peak_base) const = 0;
55 };
56 
57 
58 } // namespace pappso
virtual void detect(const Trace &trace, TraceDetectionSinkInterface &sink, bool remove_peak_base) const =0
detect peaks on a trace
virtual void setTracePeak(TracePeak &xic_peak)=0
A simple container of DataPoint instances.
Definition: trace.h:148
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< TraceDetectionInterface > TraceDetectionInterfaceSPtr
std::shared_ptr< const TraceDetectionInterface > TraceDetectionInterfaceCstSPtr