libpappsomspp
Library for mass spectrometry
wraptandeminput.h
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1 /**
2  * \file pappsomspp/processing/tandemwrapper/wraptandeminput.h
3  * \date 13/11/2021
4  * \author Olivier Langella
5  * \brief rewrites tandem xml input file with temporary files
6  */
7 
8 /*******************************************************************************
9  * Copyright (c) 2021 Olivier Langella <Olivier.Langella@u-psud.fr>.
10  *
11  * This file is part of PAPPSOms-tools.
12  *
13  * PAPPSOms-tools is free software: you can redistribute it and/or modify
14  * it under the terms of the GNU General Public License as published by
15  * the Free Software Foundation, either version 3 of the License, or
16  * (at your option) any later version.
17  *
18  * PAPPSOms-tools is distributed in the hope that it will be useful,
19  * but WITHOUT ANY WARRANTY; without even the implied warranty of
20  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21  * GNU General Public License for more details.
22  *
23  * You should have received a copy of the GNU General Public License
24  * along with PAPPSOms-tools. If not, see <http://www.gnu.org/licenses/>.
25  *
26  ******************************************************************************/
27 
28 #pragma once
29 
30 #include <QDebug>
31 #include <QFile>
32 #include "../xml/xmlstreamreaderinterface.h"
33 /**
34  * @todo write docs
35  */
36 namespace pappso
37 {
38 
39 /**
40  * @todo write docs
41  */
43 {
44  public:
45  /**
46  * Default constructor
47  */
48  WrapTandemInput(const QString &destinationMzXmlFile,
49  const QString &destinationTandemInputFile,
50  const QString &destinationTandemOutputFile);
51 
52  /**
53  * Destructor
54  */
55  virtual ~WrapTandemInput();
56 
57 
58  const QString &getOriginalMsDataFileName() const;
59  const QString &getOriginalTandemOutputFileName() const;
60 
61  const QString &getOriginalTandemPresetFileName() const;
62 
63 
64  protected:
65  virtual void readStream() override;
66 
67  private:
75  QXmlStreamWriter m_writerXmlTandemInput;
76 };
77 } // namespace pappso
QXmlStreamWriter m_writerXmlTandemInput
virtual void readStream() override
WrapTandemInput(const QString &destinationMzXmlFile, const QString &destinationTandemInputFile, const QString &destinationTandemOutputFile)
const QString & getOriginalTandemOutputFileName() const
QString m_destinationTandemInputFileName
QString m_destinationTandemOutputFileName
const QString & getOriginalTandemPresetFileName() const
const QString & getOriginalMsDataFileName() const
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39