libpappsomspp
Library for mass spectrometry
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calculate a TIC chromatogram More...
#include <msrunreader.h>
Public Member Functions | |
MsRunReaderTicChromatogram () | |
virtual | ~MsRunReaderTicChromatogram () |
virtual void | setQualifiedMassSpectrum (const QualifiedMassSpectrum &qualified_mass_spectrum) override |
virtual bool | needPeakList () const override |
tells if we need the peak list (if we want the binary data) for each spectrum More... | |
Trace | getTicChromatogram () const |
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virtual bool | needMsLevelPeakList (unsigned int ms_level) const final |
tells if we need the peak list (if we want the binary data) for each spectrum, given an MS level More... | |
virtual void | setNeedMsLevelPeakList (unsigned int ms_level, bool want_peak_list) final |
tells if we need the peak list given More... | |
virtual bool | shouldStop () |
virtual void | loadingEnded () |
virtual void | spectrumListHasSize (std::size_t size) |
virtual void | setReadAhead (bool is_read_ahead) final |
use threads to read a spectrum by batch of batch_size More... | |
virtual bool | isReadAhead () const |
tells if we want to read ahead spectrum More... | |
Private Attributes | |
MapTrace | m_ticChromMapTrace |
calculate a TIC chromatogram
Definition at line 167 of file msrunreader.h.
pappso::MsRunReaderTicChromatogram::MsRunReaderTicChromatogram | ( | ) |
Definition at line 392 of file msrunreader.cpp.
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virtual |
Definition at line 397 of file msrunreader.cpp.
Trace pappso::MsRunReaderTicChromatogram::getTicChromatogram | ( | ) | const |
Definition at line 446 of file msrunreader.cpp.
References m_ticChromMapTrace, and pappso::MapTrace::toTrace().
Referenced by pappso::MsRunReader::getTicChromatogram().
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overridevirtual |
tells if we need the peak list (if we want the binary data) for each spectrum
Implements pappso::SpectrumCollectionHandlerInterface.
Definition at line 403 of file msrunreader.cpp.
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overridevirtual |
Implements pappso::SpectrumCollectionHandlerInterface.
Definition at line 410 of file msrunreader.cpp.
References pappso::QualifiedMassSpectrum::getMassSpectrumSPtr(), pappso::QualifiedMassSpectrum::getMsLevel(), pappso::QualifiedMassSpectrum::getRtInMinutes(), m_ticChromMapTrace, pappso::res, and pappso::rt.
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private |
Definition at line 180 of file msrunreader.h.
Referenced by getTicChromatogram(), and setQualifiedMassSpectrum().