libpappsomspp
Library for mass spectrometry
pappso::MsRunRetentionTime< T > Member List

This is the complete list of members for pappso::MsRunRetentionTime< T >, including all inherited members.

addPeptideAsSeamark(const T &peptide_id, std::size_t ms2_spectrum_index)pappso::MsRunRetentionTime< T >
addPeptideAsSeamark(const T &peptide_id, double retentionTime, double precursorIntensity)pappso::MsRunRetentionTime< T >
align(const MsRunRetentionTime< T > &msrun_retention_time_reference)pappso::MsRunRetentionTime< T >
ComputeRetentionTimeReference enum namepappso::MsRunRetentionTime< T >private
computeSeamarks()pappso::MsRunRetentionTime< T >
correctNewTimeValues(Trace &ms1_aligned_points, double correction_parameter)pappso::MsRunRetentionTime< T >private
getAlignedRetentionTimeVector() constpappso::MsRunRetentionTime< T >
getBackRetentionTimeReference() constpappso::MsRunRetentionTime< T >protected
getCommonDeltaRt(const std::vector< MsRunRetentionTimeSeamarkPoint< T >> &other_seamarks) constpappso::MsRunRetentionTime< T >
getCommonDeltaRt(Trace &delta_rt, const std::vector< MsRunRetentionTimeSeamarkPoint< T >> &other_seamarks) constpappso::MsRunRetentionTime< T >private
getCommonSeamarksDeltaRt(const MsRunRetentionTime< T > &msrun_retention_time_reference) constpappso::MsRunRetentionTime< T >
getFrontRetentionTimeReference() constpappso::MsRunRetentionTime< T >protected
getMs1MeanFilter() constpappso::MsRunRetentionTime< T >
getMs1RetentionTimeVector() constpappso::MsRunRetentionTime< T >
getMs2MeanFilter() constpappso::MsRunRetentionTime< T >
getMs2MedianFilter() constpappso::MsRunRetentionTime< T >
getMsRunId() constpappso::MsRunRetentionTime< T >
getMsRunReaderSPtr() constpappso::MsRunRetentionTime< T >
getNumberOfCorrectedValues() constpappso::MsRunRetentionTime< T >
getSeamarks() constpappso::MsRunRetentionTime< T >
getSeamarksReferences() constpappso::MsRunRetentionTime< T >protected
isAligned() constpappso::MsRunRetentionTime< T >
linearRegressionMs2toMs1(Trace &ms1_aligned_points, const Trace &common_points)pappso::MsRunRetentionTime< T >private
m_alignedRetentionTimeVectorpappso::MsRunRetentionTime< T >private
m_allMs2Pointspappso::MsRunRetentionTime< T >private
m_ms1MeanFilterpappso::MsRunRetentionTime< T >private
m_ms1RetentionTimeVectorpappso::MsRunRetentionTime< T >private
m_ms2MeanFilterpappso::MsRunRetentionTime< T >private
m_ms2MedianFilterpappso::MsRunRetentionTime< T >private
m_retentionTimeReferenceMethodpappso::MsRunRetentionTime< T >private
m_seamarkspappso::MsRunRetentionTime< T >private
m_valuesCorrectedpappso::MsRunRetentionTime< T >private
mcsp_msrunIdpappso::MsRunRetentionTime< T >private
msp_msrunReaderpappso::MsRunRetentionTime< T >private
MsRunRetentionTime(MsRunReaderSPtr msrun_reader_sp)pappso::MsRunRetentionTime< T >
MsRunRetentionTime(const MsRunRetentionTime< T > &other)pappso::MsRunRetentionTime< T >
setAlignedRetentionTimeVector(const std::vector< double > &aligned_times)pappso::MsRunRetentionTime< T >
setMs1MeanFilter(const FilterMorphoMean &ms1MeanFilter)pappso::MsRunRetentionTime< T >
setMs2MeanFilter(const FilterMorphoMean &ms2MeanFilter)pappso::MsRunRetentionTime< T >
setMs2MedianFilter(const FilterMorphoMedian &ms2MedianFilter)pappso::MsRunRetentionTime< T >
translateAligned2OriginalRetentionTime(double aligned_retention_time) constpappso::MsRunRetentionTime< T >
translateOriginal2AlignedRetentionTime(double original_retention_time) constpappso::MsRunRetentionTime< T >
~MsRunRetentionTime()pappso::MsRunRetentionTime< T >