libpappsomspp
Library for mass spectrometry
trace.cpp File Reference
#include <numeric>
#include <limits>
#include <vector>
#include <map>
#include <cmath>
#include <algorithm>
#include <iostream>
#include <iomanip>
#include <QDebug>
#include <QObject>
#include "trace.h"
#include "maptrace.h"
#include "../processing/combiners/tracepluscombiner.h"
#include "../processing/combiners/traceminuscombiner.h"
#include "../types.h"
#include "../pappsoexception.h"
#include "../exception/exceptionoutofrange.h"
#include "../exception/exceptionnotpossible.h"
#include "../processing/filters/filterresample.h"
#include "../processing/filters/filterpass.h"

Go to the source code of this file.

Namespaces

 pappso
 tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multicharge peaks to monocharge
 

Functions

QDataStream & pappso::operator<< (QDataStream &out, const Trace &trace)
 
QDataStream & pappso::operator>> (QDataStream &out, Trace &trace)
 
std::vector< DataPoint >::iterator pappso::findFirstEqualOrGreaterX (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &value)
 find the first element in which X is equal or greater than the value searched important : it implies that Trace is sorted by X More...
 
std::vector< DataPoint >::const_iterator pappso::findFirstEqualOrGreaterX (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &value)
 
std::vector< DataPoint >::iterator pappso::findFirstGreaterX (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &value)
 find the first element in which X is greater than the value searched important : it implies that Trace is sorted by X More...
 
std::vector< DataPoint >::const_iterator pappso::findFirstGreaterX (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &value)
 
std::vector< DataPoint >::iterator pappso::findDifferentYvalue (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end, const double &y_value)
 find the first element in which Y is different of value More...
 
std::vector< DataPoint >::const_iterator pappso::findDifferentYvalue (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, const double &y_value)
 
std::vector< DataPoint >::const_iterator pappso::minYDataPoint (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
 
std::vector< DataPoint >::iterator pappso::minYDataPoint (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end)
 find the element with the smallest Y value (intensity) More...
 
std::vector< DataPoint >::const_iterator pappso::maxYDataPoint (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
 
std::vector< DataPoint >::iterator pappso::maxYDataPoint (std::vector< DataPoint >::iterator begin, std::vector< DataPoint >::iterator end)
 find the element with the greatest Y value (intensity) More...
 
std::vector< DataPoint >::const_iterator pappso::moveLowerYRigthDataPoint (const Trace &trace, std::vector< DataPoint >::const_iterator begin)
 Move right to the lower value. More...
 
std::vector< DataPoint >::const_iterator pappso::moveLowerYLeftDataPoint (const Trace &trace, std::vector< DataPoint >::const_iterator begin)
 Move left to the lower value. More...
 
double pappso::sumYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double init)
 calculate the sum of y value of a trace More...
 
double pappso::meanYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
 calculate the mean of y value of a trace More...
 
double pappso::quantileYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double quantile)
 calculate the quantile of y value of a trace More...
 
double pappso::medianYTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
 calculate the median of y value of a trace More...
 
double pappso::areaTrace (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end)
 calculate the area of a trace More...
 
Trace pappso::flooredLocalMaxima (std::vector< DataPoint >::const_iterator begin, std::vector< DataPoint >::const_iterator end, double y_floor)
 

Variables

int traceMetaTypeId = qRegisterMetaType<pappso::Trace>("pappso::Trace")
 
int tracePtrMetaTypeId = qRegisterMetaType<pappso::Trace *>("pappso::Trace *")
 

Variable Documentation

◆ traceMetaTypeId

int traceMetaTypeId = qRegisterMetaType<pappso::Trace>("pappso::Trace")

Definition at line 25 of file trace.cpp.

◆ tracePtrMetaTypeId

int tracePtrMetaTypeId = qRegisterMetaType<pappso::Trace *>("pappso::Trace *")

Definition at line 26 of file trace.cpp.