libpappsomspp
Library for mass spectrometry
pappso::TimsData Member List

This is the complete list of members for pappso::TimsData, including all inherited members.

fillFrameIdDescrList()pappso::TimsDataprivate
fillSpectrumDescriptionWithSqlRecord(SpectrumDescr &spectrum_descr, QSqlQuery &qprecursor_list)pappso::TimsDataprivate
getClosestPrecursorIdByMz(std::vector< std::vector< double >> ids, double mz_value)pappso::TimsDataprivate
getFrameIdDescrList() constpappso::TimsData
getMassSpectrumCstSPtr(std::size_t timsId, std::size_t scanNum)pappso::TimsData
getMassSpectrumCstSPtrByRawIndex(std::size_t raw_index)pappso::TimsData
getMatchPrecursorIdByKo(std::vector< std::vector< double >> ids, double ko_value)pappso::TimsDataprivate
getMs2BuiltinCentroid() constpappso::TimsData
getMsLevelBySpectrumIndex(std::size_t spectrum_index)pappso::TimsData
getPrecursorsFromMzRtCharge(int charge, double mz_val, double rt_sec, double k0)pappso::TimsData
getQualifiedMassSpectrumByRawIndex(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, std::size_t spectrum_index, bool want_binary_data)pappso::TimsData
getQualifiedMs1MassSpectrumByPrecursorId(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, const SpectrumDescr &spectrum_descr, bool want_binary_data)pappso::TimsData
getQualifiedMs2MassSpectrumByPrecursorId(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, const SpectrumDescr &spectrum_descr, bool want_binary_data)pappso::TimsData
getRawIndexFromCoordinate(std::size_t frame_id, std::size_t scan_num) constpappso::TimsDataprivate
getRawMs2ByPrecursorId(std::size_t precursor_index)pappso::TimsData
getRawMsBySpectrumIndex(std::size_t spectrum_index)pappso::TimsData
getRetentionTimeLine() constpappso::TimsDatavirtual
getScanCoordinateFromRawIndex(std::size_t spectrum_index) constpappso::TimsDataprivate
getSpectrumDescrWithPrecursorId(std::size_t precursor_id)pappso::TimsData
getSpectrumDescrWithScanCoordinate(const std::pair< std::size_t, std::size_t > &scan_coordinate)pappso::TimsDataprivate
getTicChromatogram() constpappso::TimsData
getTimsFrameBaseCstSPtr(std::size_t timsId)pappso::TimsDataprivate
getTimsFrameBaseCstSPtrCached(std::size_t timsId)pappso::TimsDataprivate
getTimsFrameCstSPtr(std::size_t timsId)pappso::TimsData
getTimsFrameCstSPtrCached(std::size_t timsId)pappso::TimsData
getTimsMS1FrameIdRange(double rt_begin, double rt_end) constpappso::TimsData
getTotalNumberOfFrames() constpappso::TimsData
getTotalNumberOfPrecursors() constpappso::TimsData
getTotalNumberOfScans() constpappso::TimsData
getXicCoordTimsFromPrecursorId(std::size_t precursor_id, PrecisionPtr precision_ptr)pappso::TimsData
m_builtinMs2Centroidpappso::TimsDataprivate
m_cacheSizepappso::TimsDataprivate
m_frameIdDescrListpappso::TimsDataprivate
m_hasPrecursorTablepappso::TimsDataprivate
m_isMonoThreadpappso::TimsDataprivate
m_mapFramesRecordpappso::TimsDataprivate
m_mapMzCalibrationRecordpappso::TimsDataprivate
m_mapTimsCalibrationRecordpappso::TimsDataprivate
m_mapXicCoordRecordpappso::TimsDataprivate
m_mutexpappso::TimsDataprivate
m_someoneIsLoadingFrameIdpappso::TimsDataprivate
m_thousandIndexToFrameIdDescrListIndexpappso::TimsDataprivate
m_timsDataDirectorypappso::TimsDataprivate
m_timsFrameBaseCachepappso::TimsDataprivate
m_timsFrameCachepappso::TimsDataprivate
m_totalNumberOfFramespappso::TimsDataprivate
m_totalNumberOfPrecursorspappso::TimsDataprivate
m_totalNumberOfScanspappso::TimsDataprivate
mcsp_ms1Filterpappso::TimsDataprivate
mcsp_ms2Filterpappso::TimsDataprivate
mpa_mzCalibrationStorepappso::TimsDataprivate
mpa_timsBinDecpappso::TimsDataprivate
ms2ReaderGenerateMS1MS2Spectrum(const MsRunIdCstSPtr &msrun_id, std::vector< QualifiedMassSpectrum > &qualified_mass_spectrum_list, SpectrumCollectionHandlerInterface &handler, const SpectrumDescr &spectrum_descr, unsigned int ms_level)pappso::TimsDataprivate
ms2ReaderSpectrumCollectionByMsLevel(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, unsigned int ms_level)pappso::TimsData
openDatabaseConnection() constpappso::TimsDataprivate
rawReaderSpectrumCollectionByMsLevel(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, unsigned int ms_level)pappso::TimsData
setMonoThread(bool is_mono_thread)pappso::TimsData
setMs1FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter)pappso::TimsData
setMs2BuiltinCentroid(bool centroid)pappso::TimsData
setMs2FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter)pappso::TimsData
TimsData(QDir timsDataDirectory)pappso::TimsData
TimsData(const TimsData &other)pappso::TimsData
~TimsData()pappso::TimsDatavirtual