libpappsomspp
Library for mass spectrometry
peptidemodificatortee.h
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1 
2 /*******************************************************************************
3  * Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 
25 #pragma once
26 
27 #include "enzymeproductinterface.h"
28 #include "../pappsoexception.h"
29 
30 namespace pappso
31 {
32 
33 
35 {
36 
37  public:
40  virtual ~PeptideModificatorTee();
41  void setPeptideSp(std::int8_t sequence_database_id,
42  const ProteinSp &protein_sp,
43  bool is_decoy,
44  const PeptideSp &peptide_sp_original,
45  unsigned int start,
46  bool is_nter,
47  unsigned int missed_cleavage_number,
48  bool semi_enzyme) override;
49 
50  void addModificator(PeptideModificatorInterface *p_peptide_mod);
51 
52 
53  private:
54  std::list<PeptideModificatorInterface *> m_peptideModPtrList;
55 };
56 
57 
58 } // namespace pappso
std::list< PeptideModificatorInterface * > m_peptideModPtrList
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< const Peptide > PeptideSp
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition: protein.h:43