acquireSlices(const MzRange &mz_range) | pappso::MsRunXicExtractorDisk | protected |
appendSliceOnDisk(unsigned int slice_number, MassSpectrum &spectrum, std::size_t ipos) | pappso::MsRunXicExtractorDisk | protected |
endPwizRead() | pappso::MsRunXicExtractorDisk | protectedvirtual |
extractOneXicCoord(XicCoord &xic_coord) | pappso::MsRunXicExtractorDisk | private |
extractXicCoordSPtrList(UiMonitorInterface &monitor, std::vector< XicCoordSPtr > &xic_coord_list) final | pappso::MsRunXicExtractorInterface | virtual |
extractXicCoordSPtrListParallelized(UiMonitorInterface &monitor, std::vector< XicCoordSPtr > &xic_coord_list) final | pappso::MsRunXicExtractorInterface | virtual |
getMsRunId() const | pappso::MsRunXicExtractorInterface | |
getMsRunReaderSPtr() const | pappso::MsRunXicExtractorInterface | |
getXicFromPwizMSDataFile(std::vector< Xic * > &xic_list, const std::vector< MzRange > &mass_range_list, pappso::pappso_double rt_begin, pappso::pappso_double rt_end) | pappso::MsRunXicExtractor | protectedvirtual |
m_maxMz | pappso::MsRunXicExtractorDisk | protected |
m_minMz | pappso::MsRunXicExtractorDisk | protected |
m_msrun_points | pappso::MsRunXicExtractor | protected |
m_msRunSliceListCache | pappso::MsRunXicExtractorDisk | protected |
m_mutex | pappso::MsRunXicExtractorDisk | protected |
m_retentionTimeAroundTarget | pappso::MsRunXicExtractorInterface | protected |
m_retentionTimeList | pappso::MsRunXicExtractorDisk | protected |
m_rtSize | pappso::MsRunXicExtractorDisk | protected |
m_temporaryDirectory | pappso::MsRunXicExtractorDisk | protected |
m_xicExtractMethod | pappso::MsRunXicExtractorInterface | protected |
mcsp_postExtractionTraceFilter | pappso::MsRunXicExtractorInterface | protected |
mpa_temporaryDirectory | pappso::MsRunXicExtractorDisk | protected |
msp_msrun_reader | pappso::MsRunXicExtractorInterface | protected |
MsRunXicExtractor(const MsRunXicExtractor &other) | pappso::MsRunXicExtractor | |
MsRunXicExtractor(MsRunReaderSPtr &msrun_reader) | pappso::MsRunXicExtractor | protected |
MsRunXicExtractorDisk(MsRunReaderSPtr &msrun_reader) | pappso::MsRunXicExtractorDisk | |
MsRunXicExtractorDisk(const MsRunXicExtractorDisk &other) | pappso::MsRunXicExtractorDisk | |
MsRunXicExtractorDisk(MsRunReaderSPtr &msrun_reader, const QDir &temporary_dir) | pappso::MsRunXicExtractorDisk | protected |
MsRunXicExtractorFactory | pappso::MsRunXicExtractorDisk | private |
MsRunXicExtractorInterface(MsRunReaderSPtr &msrun_reader) | pappso::MsRunXicExtractorInterface | protected |
MsRunXicExtractorInterface(const MsRunXicExtractorInterface &other) | pappso::MsRunXicExtractorInterface | protected |
postExtractionProcess(UiMonitorInterface &monitor, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_begin, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_end) | pappso::MsRunXicExtractorInterface | protectedvirtual |
prepareExtractor() | pappso::MsRunXicExtractorDisk | protected |
protectedExtractXicCoordSPtrList(UiMonitorInterface &monitor, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_begin, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_end) override | pappso::MsRunXicExtractorDisk | protectedvirtual |
serializeMsRun() | pappso::MsRunXicExtractorDisk | protected |
setPostExtractionTraceFilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter) | pappso::MsRunXicExtractorInterface | |
setRetentionTimeAroundTarget(double range_in_seconds) | pappso::MsRunXicExtractorInterface | |
setXicExtractMethod(XicExtractMethod method) | pappso::MsRunXicExtractorInterface | |
storeSlices(std::map< unsigned int, MassSpectrum > &slice_vector, std::size_t ipos) | pappso::MsRunXicExtractorDisk | protectedvirtual |
unserializeSlice(unsigned int slice_number) | pappso::MsRunXicExtractorDisk | protected |
~MsRunXicExtractor() | pappso::MsRunXicExtractor | virtual |
~MsRunXicExtractorDisk() | pappso::MsRunXicExtractorDisk | virtual |
~MsRunXicExtractorInterface() | pappso::MsRunXicExtractorInterface | protectedvirtual |