libpappsomspp
Library for mass spectrometry
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#include <timsdata.h>
Public Attributes | |
std::size_t | parent_frame = 0 |
std::size_t | precursor_id = 0 |
std::size_t | scan_mobility_start = 0 |
std::size_t | scan_mobility_end = 0 |
std::size_t | ms1_index = 0 |
std::size_t | ms2_index = 0 |
double | isolationMz = 0 |
double | isolationWidth = 0 |
float | collisionEnergy = 0 |
std::vector< std::size_t > | tims_frame_list |
PrecursorIonData | precursor_ion_data |
Definition at line 126 of file timsdata.h.
float pappso::TimsData::SpectrumDescr::collisionEnergy = 0 |
Definition at line 136 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), and pappso::TimsData::rawReaderSpectrumCollectionByMsLevel().
double pappso::TimsData::SpectrumDescr::isolationMz = 0 |
Definition at line 134 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), and pappso::TimsData::rawReaderSpectrumCollectionByMsLevel().
double pappso::TimsData::SpectrumDescr::isolationWidth = 0 |
Definition at line 135 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), and pappso::TimsData::rawReaderSpectrumCollectionByMsLevel().
std::size_t pappso::TimsData::SpectrumDescr::ms1_index = 0 |
Definition at line 132 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs1MassSpectrumByPrecursorId(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), and pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel().
std::size_t pappso::TimsData::SpectrumDescr::ms2_index = 0 |
Definition at line 133 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs1MassSpectrumByPrecursorId(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), pappso::TimsMsRunReaderMs2::qualifiedMassSpectrum(), and pappso::TimsMsRunReaderMs2Selected::qualifiedMassSpectrum().
std::size_t pappso::TimsData::SpectrumDescr::parent_frame = 0 |
Definition at line 128 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs1MassSpectrumByPrecursorId(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), and pappso::TimsData::rawReaderSpectrumCollectionByMsLevel().
std::size_t pappso::TimsData::SpectrumDescr::precursor_id = 0 |
Definition at line 129 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs1MassSpectrumByPrecursorId(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), and pappso::TimsData::rawReaderSpectrumCollectionByMsLevel().
PrecursorIonData pappso::TimsData::SpectrumDescr::precursor_ion_data |
Definition at line 138 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), and pappso::TimsData::rawReaderSpectrumCollectionByMsLevel().
std::size_t pappso::TimsData::SpectrumDescr::scan_mobility_end = 0 |
Definition at line 131 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs1MassSpectrumByPrecursorId(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), and pappso::TimsData::rawReaderSpectrumCollectionByMsLevel().
std::size_t pappso::TimsData::SpectrumDescr::scan_mobility_start = 0 |
Definition at line 130 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs1MassSpectrumByPrecursorId(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel(), and pappso::TimsData::rawReaderSpectrumCollectionByMsLevel().
std::vector<std::size_t> pappso::TimsData::SpectrumDescr::tims_frame_list |
Definition at line 137 of file timsdata.h.
Referenced by pappso::TimsData::fillSpectrumDescriptionWithSqlRecord(), pappso::TimsData::getQualifiedMs2MassSpectrumByPrecursorId(), pappso::TimsData::getSpectrumDescrWithPrecursorId(), pappso::TimsData::getSpectrumDescrWithScanCoordinate(), and pappso::TimsData::ms2ReaderSpectrumCollectionByMsLevel().