addAa(char aa) | pappso::PeptideFixedModificationBuilder | |
getModificationPositionList(std::vector< unsigned int > &position_list, const QString &peptide_str) final | pappso::PeptideModificatorBase | protectedvirtual |
getModificationPositionList(std::vector< unsigned int > &position_list, const Peptide *p_peptide, AaModificationP mod, unsigned int modification_counter) | pappso::PeptideModificatorBase | protectedvirtual |
m_aaModificationList | pappso::PeptideFixedModificationBuilder | private |
m_isProtCterMod | pappso::PeptideFixedModificationBuilder | private |
m_isProtElseMod | pappso::PeptideFixedModificationBuilder | private |
m_isProtNterMod | pappso::PeptideFixedModificationBuilder | private |
m_pattern | pappso::PeptideModificatorBase | protected |
m_sink | pappso::PeptideFixedModificationBuilder | private |
mp_mod | pappso::PeptideFixedModificationBuilder | private |
PeptideFixedModificationBuilder(AaModificationP p_mod) | pappso::PeptideFixedModificationBuilder | |
PeptideModificatorBase() | pappso::PeptideModificatorBase | |
setModificationPattern(QString &pattern) final | pappso::PeptideModificatorBase | virtual |
setPeptideSp(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const PeptideSp &peptide_sp_original, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) override | pappso::PeptideFixedModificationBuilder | virtual |
setProtCter(bool arg1) | pappso::PeptideFixedModificationBuilder | inline |
setProtElse(bool arg1) | pappso::PeptideFixedModificationBuilder | inline |
setProtNter(bool arg1) | pappso::PeptideFixedModificationBuilder | inline |
setSink(PeptideModificatorInterface *sink) override | pappso::PeptideFixedModificationBuilder | inlinevirtual |
~PeptideFixedModificationBuilder() | pappso::PeptideFixedModificationBuilder | virtual |
~PeptideModificatorBase() | pappso::PeptideModificatorBase | virtual |
~PeptideModificatorInterface() | pappso::PeptideModificatorInterface | inlinevirtual |