libpappsomspp
Library for mass spectrometry
peptidesemienzyme.h
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1 
2 /*******************************************************************************
3  * Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 
25 #pragma once
26 
27 #include "enzymeproductinterface.h"
28 
29 
30 namespace pappso
31 {
32 
33 
34 /** \brief cut a regular peptide obtained with an enzyme at any position from
35  * Nter or Cter
36  *
37  * WORK IN PROGRESS
38  * */
41 {
42  public:
44  virtual ~PeptideSemiEnzyme();
45 
46  // EnzymeProductInterface
47  void setPeptide(std::int8_t sequence_database_id,
48  const ProteinSp &protein_sp,
49  bool is_decoy,
50  const QString &peptide,
51  unsigned int start,
52  bool is_nter,
53  unsigned int missed_cleavage_number,
54  bool semi_enzyme) override;
55 
56  // PeptideSinkInterface
57  void
59  {
60  m_sink = sink;
61  };
62 
63 
64  private:
65  EnzymeProductInterface *m_sink = nullptr;
66 };
67 
68 
69 } // namespace pappso
cut a regular peptide obtained with an enzyme at any position from Nter or Cter
void setSink(EnzymeProductInterface *sink) override
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition: protein.h:43