libpappsomspp
Library for mass spectrometry
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collect retention times along MS run More...
#include <msrunreader.h>
Public Member Functions | |
MsRunReaderRetentionTimeLine () | |
virtual | ~MsRunReaderRetentionTimeLine () |
virtual void | setQualifiedMassSpectrum (const QualifiedMassSpectrum &spectrum) override |
virtual bool | needPeakList () const override |
tells if we need the peak list (if we want the binary data) for each spectrum More... | |
const std::vector< double > & | getRetentionTimeLine () const |
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virtual bool | needMsLevelPeakList (unsigned int ms_level) const final |
tells if we need the peak list (if we want the binary data) for each spectrum, given an MS level More... | |
virtual void | setNeedMsLevelPeakList (unsigned int ms_level, bool want_peak_list) final |
tells if we need the peak list given More... | |
virtual bool | shouldStop () |
virtual void | loadingEnded () |
virtual void | spectrumListHasSize (std::size_t size) |
virtual void | setReadAhead (bool is_read_ahead) final |
use threads to read a spectrum by batch of batch_size More... | |
virtual bool | isReadAhead () const |
tells if we want to read ahead spectrum More... | |
Private Attributes | |
std::vector< double > | m_retention_time_list |
collect retention times along MS run
Definition at line 149 of file msrunreader.h.
pappso::MsRunReaderRetentionTimeLine::MsRunReaderRetentionTimeLine | ( | ) |
Definition at line 223 of file msrunreader.cpp.
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virtual |
Definition at line 229 of file msrunreader.cpp.
const std::vector< double > & pappso::MsRunReaderRetentionTimeLine::getRetentionTimeLine | ( | ) | const |
Definition at line 252 of file msrunreader.cpp.
References m_retention_time_list.
Referenced by pappso::MsRunReader::getRetentionTimeLine().
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overridevirtual |
tells if we need the peak list (if we want the binary data) for each spectrum
Implements pappso::SpectrumCollectionHandlerInterface.
Definition at line 236 of file msrunreader.cpp.
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overridevirtual |
Implements pappso::SpectrumCollectionHandlerInterface.
Definition at line 243 of file msrunreader.cpp.
References pappso::QualifiedMassSpectrum::getMassSpectrumId(), pappso::MassSpectrumId::getNativeId(), pappso::QualifiedMassSpectrum::getRtInSeconds(), and m_retention_time_list.
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private |
Definition at line 153 of file msrunreader.h.
Referenced by getRetentionTimeLine(), and setQualifiedMassSpectrum().