libpappsomspp
Library for mass spectrometry
xicpeptideinterface.h
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1 
2 /*******************************************************************************
3  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 
25 
26 #pragma once
27 
28 #include "qualifiedxic.h"
29 #include "../peptide/peptideinterface.h"
30 
31 namespace pappso
32 {
33 
35 {
36  private:
37  const unsigned int m_z;
39 
40  protected:
41  XicPeptideInterface(const MsRunId &msrun_id,
42  const PeptideInterfaceSp &peptideInterfaceSp,
43  PrecisionPtr precision,
44  unsigned int charge);
45 
46  public:
48  virtual unsigned int
49  getCharge() const
50  {
51  return m_z;
52  };
53 };
54 
55 } // namespace pappso
MS run identity MsRunId identifies an MS run with a unique ID (XmlId) and contains eventually informa...
Definition: msrunid.h:53
const PeptideInterfaceSp msp_peptideInterface
virtual unsigned int getCharge() const
XicPeptideInterface(const MsRunId &msrun_id, const PeptideInterfaceSp &peptideInterfaceSp, PrecisionPtr precision, unsigned int charge)
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< const PeptideInterface > PeptideInterfaceSp