addFixedCterModificationString(const QString &mod_str) | pappso::PeptideModificatorPipeline | |
addFixedModificationString(const QString &mod_str) | pappso::PeptideModificatorPipeline | |
addFixedNterModificationString(const QString &mod_str) | pappso::PeptideModificatorPipeline | |
addLabeledModificationString(const QString &mod_str) | pappso::PeptideModificatorPipeline | |
addPotentialCterModificationString(const QString &mod_str) | pappso::PeptideModificatorPipeline | |
addPotentialModificationString(const QString &mod_str) | pappso::PeptideModificatorPipeline | |
addPotentialNterModificationString(const QString &mod_str) | pappso::PeptideModificatorPipeline | |
m_pepModificatorPtrList | pappso::PeptideModificatorPipeline | private |
m_sink | pappso::PeptideModificatorPipeline | private |
mp_firstModificator | pappso::PeptideModificatorPipeline | private |
mp_lastPeptideSinkInterface | pappso::PeptideModificatorPipeline | private |
mp_peptideModificatorTee | pappso::PeptideModificatorPipeline | private |
parseFixedModification(const QString &mod_str, bool Nter, bool Cter, bool else_prot) | pappso::PeptideModificatorPipeline | private |
parseLabeledModification(const QString &mod_str, bool Nter, bool Cter, bool else_prot) | pappso::PeptideModificatorPipeline | private |
parsePotentialModification(const QString &mod_str, bool Nter, bool Cter, bool else_prot) | pappso::PeptideModificatorPipeline | private |
PeptideModificatorPipeline() | pappso::PeptideModificatorPipeline | |
PeptideModificatorPipeline(const PeptideModificatorPipeline &other) | pappso::PeptideModificatorPipeline | |
privAddFixedModificationString(const QString &mod_str, bool Nter, bool Cter, bool else_prot) | pappso::PeptideModificatorPipeline | private |
privAddPotentialModificationString(const QString &mod_str, bool Nter, bool Cter, bool else_prot) | pappso::PeptideModificatorPipeline | private |
setPeptide(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const QString &peptide_str, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) override | pappso::PeptideModificatorPipeline | virtual |
setPeptideSp(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const PeptideSp &peptide_sp_original, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) override | pappso::PeptideModificatorPipeline | virtual |
setSink(PeptideModificatorInterface *sink) override | pappso::PeptideModificatorPipeline | virtual |
~PeptideModificatorInterface() | pappso::PeptideModificatorInterface | inlinevirtual |
~PeptideModificatorPipeline() | pappso::PeptideModificatorPipeline | virtual |