libpappsomspp
Library for mass spectrometry
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class to read retention time points of MsRun More...
#include <msrunxicextractor.h>
Public Member Functions | |
MsRunXicExtractorReadPoints (std::vector< MsRunXicExtractorPoints > &msrun_points) | |
virtual void | setQualifiedMassSpectrum (const QualifiedMassSpectrum &spectrum) override |
virtual bool | needPeakList () const override |
tells if we need the peak list (if we want the binary data) for each spectrum More... | |
virtual void | loadingEnded () override |
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virtual bool | needMsLevelPeakList (unsigned int ms_level) const final |
tells if we need the peak list (if we want the binary data) for each spectrum, given an MS level More... | |
virtual void | setNeedMsLevelPeakList (unsigned int ms_level, bool want_peak_list) final |
tells if we need the peak list given More... | |
virtual bool | shouldStop () |
virtual void | spectrumListHasSize (std::size_t size) |
virtual void | setReadAhead (bool is_read_ahead) final |
use threads to read a spectrum by batch of batch_size More... | |
virtual bool | isReadAhead () const |
tells if we want to read ahead spectrum More... | |
Private Attributes | |
std::vector< MsRunXicExtractorPoints > & | m_msrun_points |
class to read retention time points of MsRun
Definition at line 73 of file msrunxicextractor.h.
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inline |
Definition at line 79 of file msrunxicextractor.h.
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inlineoverridevirtual |
Reimplemented from pappso::SpectrumCollectionHandlerInterface.
Definition at line 99 of file msrunxicextractor.h.
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inlineoverridevirtual |
tells if we need the peak list (if we want the binary data) for each spectrum
Implements pappso::SpectrumCollectionHandlerInterface.
Definition at line 94 of file msrunxicextractor.h.
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inlineoverridevirtual |
Implements pappso::SpectrumCollectionHandlerInterface.
Definition at line 84 of file msrunxicextractor.h.
References pappso::QualifiedMassSpectrum::getMassSpectrumId(), pappso::QualifiedMassSpectrum::getMsLevel(), pappso::QualifiedMassSpectrum::getRtInSeconds(), and m_msrun_points.
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private |
Definition at line 76 of file msrunxicextractor.h.
Referenced by setQualifiedMassSpectrum().