libpappsomspp
Library for mass spectrometry
peakionmatch.cpp
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1 /**
2  * \file pappsomspp/psm/peakionmatch.cpp
3  * \date 4/4/2015
4  * \author Olivier Langella
5  * \brief associate a peak and a peptide + charge
6  */
7 
8 /*******************************************************************************
9  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
10  *
11  * This file is part of the PAPPSOms++ library.
12  *
13  * PAPPSOms++ is free software: you can redistribute it and/or modify
14  * it under the terms of the GNU General Public License as published by
15  * the Free Software Foundation, either version 3 of the License, or
16  * (at your option) any later version.
17  *
18  * PAPPSOms++ is distributed in the hope that it will be useful,
19  * but WITHOUT ANY WARRANTY; without even the implied warranty of
20  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21  * GNU General Public License for more details.
22  *
23  * You should have received a copy of the GNU General Public License
24  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25  *
26  * Contributors:
27  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
28  *implementation
29  ******************************************************************************/
30 
31 #include "peakionmatch.h"
32 
33 namespace pappso
34 {
36  const PeptideFragmentIonSp &ion_sp,
37  unsigned int charge)
38  : _peak(peak), _ion_sp(ion_sp), _charge(charge)
39 {
40 }
41 
43  : _peak(other._peak), _ion_sp(other._ion_sp), _charge(other._charge)
44 {
45 }
46 
48  : _peak(std::move(other._peak)),
49  _ion_sp(other._ion_sp),
50  _charge(std::move(other._charge))
51 {
52 }
53 
55 {
56 }
57 
58 
61 {
62  _peak = other._peak;
63  _ion_sp = other._ion_sp;
64  _charge = other._charge;
65 
66  return *this;
67 }
68 
71 {
72  return _ion_sp;
73 }
74 
75 const DataPoint &
77 {
78  return _peak;
79 }
80 
81 unsigned int
83 {
84  return _charge;
85 }
86 
89 {
90  return _ion_sp.get()->getPeptideIonType();
91 }
92 
95 {
96  return _ion_sp.get()->getPeptideFragmentSp().get()->getPeptideIonDirection();
97 }
98 
99 QString
101 {
102  return QString("%1").arg(
103  _ion_sp.get()->getCompletePeptideIonName(getCharge()));
104 }
105 
106 } // namespace pappso
PeptideFragmentIonSp _ion_sp
Definition: peakionmatch.h:65
const DataPoint & getPeak() const
PeptideIon getPeptideIonType() const
unsigned int _charge
Definition: peakionmatch.h:66
virtual const PeptideFragmentIonSp & getPeptideFragmentIonSp() const
virtual QString toString() const
PeakIonMatch & operator=(const PeakIonMatch &other)
PeptideDirection getPeptideIonDirection() const
PeakIonMatch(const DataPoint &peak, const PeptideFragmentIonSp &ion_sp, unsigned int charge)
unsigned int getCharge() const
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
PeptideIon
PeptideIon enum defines all types of ions (Nter or Cter)
Definition: types.h:386
std::shared_ptr< const PeptideFragmentIon > PeptideFragmentIonSp
PeptideDirection
Definition: peptide.h:46
associate a peak and a peptide + charge