libpappsomspp
Library for mass spectrometry
xtandempresetreader.h
Go to the documentation of this file.
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/**
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* \file pappsomspp/processing/tandemwrapper/xtandempresetreader.h
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* \date 06/02/2020
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* \author Olivier Langella
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* \brief read tandem preset file to get centroid parameters and number of
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* threads
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*/
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/*******************************************************************************
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* Copyright (c) 2020 Olivier Langella <Olivier.Langella@u-psud.fr>.
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*
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* This file is part of PAPPSOms-tools.
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*
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* PAPPSOms-tools is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms-tools is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms-tools. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#pragma once
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#include <QDebug>
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#include "../../types.h"
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#include "../xml/xmlstreamreaderinterface.h"
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/**
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* @todo write docs
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*/
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namespace
pappso
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{
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class
XtandemPresetReader
:
public
XmlStreamReaderInterface
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{
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public
:
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/**
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* Default constructor
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*/
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XtandemPresetReader
();
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/**
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* Destructor
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*/
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virtual
~XtandemPresetReader
();
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int
getNumberOfThreads
()
const
;
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const
QString
getMs2FiltersOptions
()
const
;
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int
getCountNote
()
const
;
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protected
:
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virtual
void
readStream
()
override
;
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private
:
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void
read_note
();
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private
:
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int
m_countNote
= -1;
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int
m_threads
= -1;
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PrecisionUnit
m_ms2precisionUnit
=
PrecisionUnit::dalton
;
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double
m_ms2precisionValue
= 0;
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};
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}
// namespace pappso
pappso::XmlStreamReaderInterface
convenient xml reader helper
Definition:
xmlstreamreaderinterface.h:41
pappso::XtandemPresetReader
Definition:
xtandempresetreader.h:40
pappso::XtandemPresetReader::m_threads
int m_threads
Definition:
xtandempresetreader.h:64
pappso::XtandemPresetReader::m_countNote
int m_countNote
Definition:
xtandempresetreader.h:63
pappso::XtandemPresetReader::~XtandemPresetReader
virtual ~XtandemPresetReader()
Definition:
xtandempresetreader.cpp:39
pappso::XtandemPresetReader::getMs2FiltersOptions
const QString getMs2FiltersOptions() const
Definition:
xtandempresetreader.cpp:110
pappso::XtandemPresetReader::m_ms2precisionValue
double m_ms2precisionValue
Definition:
xtandempresetreader.h:67
pappso::XtandemPresetReader::getCountNote
int getCountNote() const
Definition:
xtandempresetreader.cpp:162
pappso::XtandemPresetReader::getNumberOfThreads
int getNumberOfThreads() const
Definition:
xtandempresetreader.cpp:103
pappso::XtandemPresetReader::readStream
virtual void readStream() override
Definition:
xtandempresetreader.cpp:128
pappso::XtandemPresetReader::XtandemPresetReader
XtandemPresetReader()
Definition:
xtandempresetreader.cpp:35
pappso::XtandemPresetReader::read_note
void read_note()
Definition:
xtandempresetreader.cpp:45
pappso::XtandemPresetReader::m_ms2precisionUnit
PrecisionUnit m_ms2precisionUnit
Definition:
xtandempresetreader.h:66
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition:
aa.cpp:39
pappso::PrecisionUnit
PrecisionUnit
Definition:
types.h:64
pappso::PrecisionUnit::dalton
@ dalton
pappsomspp
processing
tandemwrapper
xtandempresetreader.h
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