libpappsomspp
Library for mass spectrometry
filterobopsimodtermname.cpp
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1 /*******************************************************************************
2  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3  *
4  * This file is part of the PAPPSOms++ library.
5  *
6  * PAPPSOms++ is free software: you can redistribute it and/or modify
7  * it under the terms of the GNU General Public License as published by
8  * the Free Software Foundation, either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * PAPPSOms++ is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18  *
19  * Contributors:
20  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21  *implementation
22  ******************************************************************************/
23 
25 
26 namespace pappso
27 {
29  OboPsiModHandlerInterface &sink, const QString &name_search)
30  : m_sink(sink)
31 {
32  m_nameMatch.setPattern(QString(name_search).replace("*", "(.*)"));
33  m_nameMatch.setPatternOptions(QRegularExpression::CaseInsensitiveOption);
34 }
35 
37 {
38 }
39 
40 
41 void
43 {
44  // qDebug() << term._psi_mod_label << " " << term._psi_ms_label;
45  if(m_nameMatch.match(term.m_name).hasMatch())
46  {
48  }
49 }
50 
51 } // namespace pappso
void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
FilterOboPsiModTermName(OboPsiModHandlerInterface &sink, const QString &name_search)
OboPsiModHandlerInterface & m_sink
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
triggered function on each obo term when parsing obo file
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39