libpappsomspp
Library for mass spectrometry
filterobopsimodtermlabel.cpp
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1 
2 /*******************************************************************************
3  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 
25 #include <QDebug>
27 
28 
29 namespace pappso
30 {
32  OboPsiModHandlerInterface &sink, const QString &label_search)
33  : m_sink(sink)
34 {
35  m_labelMatch.setPattern(QString(label_search).replace("*", "(.*)"));
36  m_labelMatch.setPatternOptions(QRegularExpression::CaseInsensitiveOption);
37 }
38 
40 {
41 }
42 
44  const FilterOboPsiModTermLabel &other)
45  : m_labelMatch(other.m_labelMatch), m_sink(other.m_sink)
46 {
47 }
48 
49 void
51 {
52  // qDebug() << term._psi_mod_label << " " << term._psi_ms_label;
53  if(m_labelMatch.match(term.m_psiModLabel).hasMatch())
54  {
56  }
57  else if(m_labelMatch.match(term.m_psiMsLabel).hasMatch())
58  {
60  }
61 }
62 } // namespace pappso
FilterOboPsiModTermLabel(OboPsiModHandlerInterface &sink, const QString &label_search)
OboPsiModHandlerInterface & m_sink
void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
triggered function on each obo term when parsing obo file
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39