libpappsomspp
Library for mass spectrometry
basecolormapplotwidget.h
Go to the documentation of this file.
1 /* This code comes right from the msXpertSuite software project.
2  *
3  * msXpertSuite - mass spectrometry software suite
4  * -----------------------------------------------
5  * Copyright(C) 2009,...,2018 Filippo Rusconi
6  *
7  * http://www.msxpertsuite.org
8  *
9  * This program is free software: you can redistribute it and/or modify
10  * it under the terms of the GNU General Public License as published by
11  * the Free Software Foundation, either version 3 of the License, or
12  * (at your option) any later version.
13  *
14  * This program is distributed in the hope that it will be useful,
15  * but WITHOUT ANY WARRANTY; without even the implied warranty of
16  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17  * GNU General Public License for more details.
18  *
19  * You should have received a copy of the GNU General Public License
20  * along with this program. If not, see <http://www.gnu.org/licenses/>.
21  *
22  * END software license
23  */
24 
25 
26 #pragma once
27 
28 /////////////////////// StdLib includes
29 
30 
31 /////////////////////// Qt includes
32 #include <QObject>
33 #include <QString>
34 #include <QWidget>
35 #include <QBrush>
36 #include <QColor>
37 #include <QVector>
38 
39 
40 /////////////////////// QCustomPlot
41 #include <cstddef>
42 #include <qcustomplot.h>
43 
44 
45 /////////////////////// Local includes
46 #include "../../exportinmportconfig.h"
47 #include "baseplotwidget.h"
48 #include "colormapplotconfig.h"
49 #include "../../trace/trace.h"
50 #include "../../vendors/tims/timsframe.h"
51 
52 
53 namespace pappso
54 {
55 
56 
57 class BaseColorMapPlotWidget;
58 
59 typedef std::shared_ptr<BaseColorMapPlotWidget> BaseColorMapPlotWidgetSPtr;
60 typedef std::shared_ptr<const BaseColorMapPlotWidget>
62 
64 {
65  Q_OBJECT;
66 
67  public:
68  explicit BaseColorMapPlotWidget(QWidget *parent);
69  explicit BaseColorMapPlotWidget(QWidget *parent,
70  const QString &x_axis_label,
71  const QString &y_axis_label);
72 
73  virtual ~BaseColorMapPlotWidget();
74 
75  virtual void
76  setColorMapPlotConfig(const ColorMapPlotConfig &color_map_config);
77  virtual const ColorMapPlotConfig &getColorMapPlotConfig();
78  const ColorMapPlotConfig *getOrigColorMapPlotConfig();
79 
80  virtual QCPColorMap *addColorMap(
81  std::shared_ptr<std::map<double, MapTrace>> double_map_trace_map_sp,
82  const ColorMapPlotConfig color_map_plot_config,
83  const QColor &color);
84 
85  virtual QCPColorMap *
86  addColorMap(const TimsFrame &tims_frame,
87  const ColorMapPlotConfig color_map_plot_config,
88  const QColor &color);
89 
90  virtual void transposeAxes();
91 
92  // Change the scale of the intensity to log10 (color, z virtual axis)
93  virtual void zAxisScaleToLog10();
94  virtual void zAxisFilterLowPassPercentage(double threshold_percentage);
95 
96  /** @brief fix maximum value for the intensity
97  */
98  virtual void zAxisFilterLowPassThreshold(double threshold);
99 
100  virtual void zAxisFilterHighPassPercentage(double threshold_percentage);
101 
102  virtual void zAxisDataResetToOriginal();
103 
104  DataKind xAxisDataKind() const;
105  DataKind yAxisDataKind() const;
106 
107  AxisScale axisScale(Axis axis) const;
108  AxisScale xAxisScale() const;
109  AxisScale yAxisScale() const;
110  AxisScale zAxisScale() const;
111 
112  virtual void setPlottingColor(QCPAbstractPlottable *plottable_p,
113  const QColor &new_color) override;
114  virtual QColor getPlottingColor(int index = 0) const override;
115 
116  void dataTo3ColString(QString &data_string);
117  void dataToMatrixString(QString &data_string, bool detailed = false);
118 
119  void currentXaxisRangeIndices(int &lower, int &upper);
120  void currentYaxisRangeIndices(int &lower, int &upper);
121 
122  signals:
123 
124  protected:
125  QCPColorMapData *mpa_origColorMapData = nullptr;
126 
128  ColorMapPlotConfig *mpa_origColorMapPlotConfig = nullptr;
129 };
130 
131 
132 } // namespace pappso
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
Axis
Definition: types.h:181
AxisScale
Definition: types.h:190
std::shared_ptr< const BaseColorMapPlotWidget > BaseColorMapPlotWidgetCstSPtr
DataKind
Definition: types.h:172
std::shared_ptr< BaseColorMapPlotWidget > BaseColorMapPlotWidgetSPtr