libpappsomspp
Library for mass spectrometry
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This is the complete list of members for pappso::PwizMsRunReader, including all inherited members.
accept(const QString &file_name) const override | pappso::PwizMsRunReader | protectedvirtual |
acquireDevice() override | pappso::PwizMsRunReader | virtual |
getMsRunId() const | pappso::MsRunReader | |
getPwizSpectrumPtr(pwiz::msdata::SpectrumList *p_spectrum_list, std::size_t spectrum_index, bool want_binary_data) const | pappso::PwizMsRunReader | protected |
getRetentionTimeLine() | pappso::MsRunReader | virtual |
getTicChromatogram() | pappso::MsRunReader | virtual |
hasScanNumbers() const override | pappso::PwizMsRunReader | virtual |
initialize() override | pappso::PwizMsRunReader | protectedvirtual |
isMonoThread() const | pappso::MsRunReader | |
m_hasScanNumbers | pappso::PwizMsRunReader | private |
m_isMonoThread | pappso::MsRunReader | private |
massSpectrumCstSPtr(std::size_t spectrum_index) override | pappso::PwizMsRunReader | virtual |
massSpectrumSPtr(std::size_t spectrum_index) override | pappso::PwizMsRunReader | virtual |
mcsp_msRunId | pappso::MsRunReader | protected |
mpa_multiMapScanNumber | pappso::MsRunReader | protected |
MsFileAccessor class | pappso::PwizMsRunReader | friend |
msp_msData | pappso::PwizMsRunReader | protected |
MsRunReader(MsRunIdCstSPtr &ms_run_id) | pappso::MsRunReader | |
MsRunReader(const MsRunReader &other) | pappso::MsRunReader | |
newXicCoordSPtrFromQualifiedMassSpectrum(const pappso::QualifiedMassSpectrum &mass_spectrum, pappso::PrecisionPtr precision) const override | pappso::PwizMsRunReader | virtual |
newXicCoordSPtrFromSpectrumIndex(std::size_t spectrum_index, pappso::PrecisionPtr precision) const override | pappso::PwizMsRunReader | virtual |
processDriftTime(pwiz::msdata::Spectrum *spectrum_p, QualifiedMassSpectrum &qualified_mass_spectrum) const | pappso::PwizMsRunReader | protected |
processRetentionTime(pwiz::msdata::Spectrum *spectrum_p, QualifiedMassSpectrum &qualified_mass_spectrum) const | pappso::PwizMsRunReader | protected |
PwizMsRunReader(MsRunIdCstSPtr &msrun_id_csp) | pappso::PwizMsRunReader | |
qualifiedMassSpectrum(std::size_t spectrum_index, bool want_binary_data=true) const override | pappso::PwizMsRunReader | virtual |
qualifiedMassSpectrumFromPwizMSData(std::size_t spectrum_index, bool want_binary_data, bool &ok) const | pappso::PwizMsRunReader | protected |
qualifiedMassSpectrumFromPwizSpectrumPtr(const MassSpectrumId &massSpectrumId, pwiz::msdata::Spectrum *spectrum_p, bool want_binary_data, bool &ok) const | pappso::PwizMsRunReader | protected |
readSpectrumCollection(SpectrumCollectionHandlerInterface &handler) override | pappso::PwizMsRunReader | virtual |
readSpectrumCollectionByMsLevel(SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) override | pappso::PwizMsRunReader | virtual |
releaseDevice() override | pappso::PwizMsRunReader | virtual |
scanNumber2SpectrumIndex(std::size_t scan_number) | pappso::MsRunReader | virtual |
setMonoThread(bool is_mono_thread) | pappso::MsRunReader | |
spectrumListSize() const override | pappso::PwizMsRunReader | virtual |
~MsRunReader() | pappso::MsRunReader | virtual |
~PwizMsRunReader() | pappso::PwizMsRunReader | virtual |