libpappsomspp
Library for mass spectrometry
pappso::PeptideVariableModificationBuilder Member List

This is the complete list of members for pappso::PeptideVariableModificationBuilder, including all inherited members.

addAa(char aa)pappso::PeptideVariableModificationBuilder
getModificationPositionList(std::vector< unsigned int > &position_list, const QString &peptide_str) finalpappso::PeptideModificatorBaseprotectedvirtual
getModificationPositionList(std::vector< unsigned int > &position_list, const Peptide *p_peptide, AaModificationP mod, unsigned int modification_counter)pappso::PeptideModificatorBaseprotectedvirtual
m_aaModificationListpappso::PeptideVariableModificationBuilderprivate
m_isProtCterModpappso::PeptideVariableModificationBuilderprotected
m_isProtElseModpappso::PeptideVariableModificationBuilderprotected
m_isProtNterModpappso::PeptideVariableModificationBuilderprotected
m_maxNumberModpappso::PeptideVariableModificationBuilderprotected
m_minNumberModpappso::PeptideVariableModificationBuilderprotected
m_modificationCountpappso::PeptideVariableModificationBuilderprotected
m_patternpappso::PeptideModificatorBaseprotected
m_sinkpappso::PeptideVariableModificationBuilderprotected
mp_modpappso::PeptideVariableModificationBuilderprotected
next_combination(const std::vector< unsigned int >::iterator first, std::vector< unsigned int >::iterator k, const std::vector< unsigned int >::iterator last)pappso::PeptideVariableModificationBuilderprotectedstatic
PeptideModificatorBase()pappso::PeptideModificatorBase
PeptideVariableModificationBuilder(AaModificationP mod)pappso::PeptideVariableModificationBuilder
setMaxNumberMod(unsigned int max_num)pappso::PeptideVariableModificationBuilderinline
setMinNumberMod(unsigned int min_num)pappso::PeptideVariableModificationBuilderinline
setModificationCounter(unsigned int counter)pappso::PeptideVariableModificationBuilderinline
setModificationPattern(QString &pattern) finalpappso::PeptideModificatorBasevirtual
setPeptideSp(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const PeptideSp &peptide_sp_original, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) overridepappso::PeptideVariableModificationBuildervirtual
setProtCter(bool arg1)pappso::PeptideVariableModificationBuilderinline
setProtElse(bool arg1)pappso::PeptideVariableModificationBuilderinline
setProtNter(bool arg1)pappso::PeptideVariableModificationBuilderinline
setSink(PeptideModificatorInterface *sink) overridepappso::PeptideVariableModificationBuilderinlinevirtual
~PeptideModificatorBase()pappso::PeptideModificatorBasevirtual
~PeptideModificatorInterface()pappso::PeptideModificatorInterfaceinlinevirtual
~PeptideVariableModificationBuilder()pappso::PeptideVariableModificationBuildervirtual