addAa(char aa) | pappso::PeptideVariableModificationBuilder | |
getModificationPositionList(std::vector< unsigned int > &position_list, const QString &peptide_str) final | pappso::PeptideModificatorBase | protectedvirtual |
getModificationPositionList(std::vector< unsigned int > &position_list, const Peptide *p_peptide, AaModificationP mod, unsigned int modification_counter) | pappso::PeptideModificatorBase | protectedvirtual |
m_aaModificationList | pappso::PeptideVariableModificationBuilder | private |
m_isProtCterMod | pappso::PeptideVariableModificationBuilder | protected |
m_isProtElseMod | pappso::PeptideVariableModificationBuilder | protected |
m_isProtNterMod | pappso::PeptideVariableModificationBuilder | protected |
m_maxNumberMod | pappso::PeptideVariableModificationBuilder | protected |
m_minNumberMod | pappso::PeptideVariableModificationBuilder | protected |
m_modificationCount | pappso::PeptideVariableModificationBuilder | protected |
m_pattern | pappso::PeptideModificatorBase | protected |
m_sink | pappso::PeptideVariableModificationBuilder | protected |
mp_mod | pappso::PeptideVariableModificationBuilder | protected |
mp_modAfter | pappso::PeptideVariableModificationReplacement | private |
next_combination(const std::vector< unsigned int >::iterator first, std::vector< unsigned int >::iterator k, const std::vector< unsigned int >::iterator last) | pappso::PeptideVariableModificationBuilder | protectedstatic |
PeptideModificatorBase() | pappso::PeptideModificatorBase | |
PeptideVariableModificationBuilder(AaModificationP mod) | pappso::PeptideVariableModificationBuilder | |
PeptideVariableModificationReplacement(AaModificationP mod_before, AaModificationP mod_after) | pappso::PeptideVariableModificationReplacement | |
replaceModificationsAtPosition(Peptide &new_peptide, unsigned int position) | pappso::PeptideVariableModificationReplacement | private |
setMaxNumberMod(unsigned int max_num) | pappso::PeptideVariableModificationBuilder | inline |
setMinNumberMod(unsigned int min_num) | pappso::PeptideVariableModificationBuilder | inline |
setModificationCounter(unsigned int counter) | pappso::PeptideVariableModificationBuilder | inline |
setModificationPattern(QString &pattern) final | pappso::PeptideModificatorBase | virtual |
setPeptideSp(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const PeptideSp &peptide_sp_original, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) override | pappso::PeptideVariableModificationReplacement | virtual |
setProtCter(bool arg1) | pappso::PeptideVariableModificationBuilder | inline |
setProtElse(bool arg1) | pappso::PeptideVariableModificationBuilder | inline |
setProtNter(bool arg1) | pappso::PeptideVariableModificationBuilder | inline |
setSink(PeptideModificatorInterface *sink) override | pappso::PeptideVariableModificationBuilder | inlinevirtual |
~PeptideModificatorBase() | pappso::PeptideModificatorBase | virtual |
~PeptideModificatorInterface() | pappso::PeptideModificatorInterface | inlinevirtual |
~PeptideVariableModificationBuilder() | pappso::PeptideVariableModificationBuilder | virtual |
~PeptideVariableModificationReplacement() | pappso::PeptideVariableModificationReplacement | virtual |