libpappsomspp
Library for mass spectrometry
timsdirectxicextractor.h
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1 /**
2  * \file pappsomspp/vendors/tims/xicextractor/timsdirectxicextractor.h
3  * \date 21/09/2019
4  * \author Olivier Langella
5  * \brief minimum functions to extract XICs from Tims Data
6  */
7 
8 /*******************************************************************************
9  * Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
10  *
11  * This file is part of the PAPPSOms++ library.
12  *
13  * PAPPSOms++ is free software: you can redistribute it and/or modify
14  * it under the terms of the GNU General Public License as published by
15  * the Free Software Foundation, either version 3 of the License, or
16  * (at your option) any later version.
17  *
18  * PAPPSOms++ is distributed in the hope that it will be useful,
19  * but WITHOUT ANY WARRANTY; without even the implied warranty of
20  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21  * GNU General Public License for more details.
22  *
23  * You should have received a copy of the GNU General Public License
24  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25  *
26  ******************************************************************************/
27 
28 #pragma once
29 
31 namespace pappso
32 {
33 /**
34  * @todo write docs
35  */
37 {
38  public:
39  /**
40  * Default constructor
41  */
43 
44  /**
45  * Destructor
46  */
47  virtual ~TimsDirectXicExtractor();
48 
49  protected:
51  UiMonitorInterface &monitor,
52  std::vector<XicCoordSPtr>::iterator it_xic_coord_list_begin,
53  std::vector<XicCoordSPtr>::iterator it_xic_coord_list_end) override;
54 };
55 } // namespace pappso
TimsDirectXicExtractor(MsRunReaderSPtr &msrun_reader)
void protectedExtractXicCoordSPtrList(UiMonitorInterface &monitor, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_begin, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_end) override
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< MsRunReader > MsRunReaderSPtr
Definition: msrunreader.h:185
minimum functions to extract XICs from Tims Data