libpappsomspp
Library for mass spectrometry
pappso::MsRunXicExtractorDiskBuffer Member List

This is the complete list of members for pappso::MsRunXicExtractorDiskBuffer, including all inherited members.

acquireSlices(const MzRange &mz_range)pappso::MsRunXicExtractorDiskprotected
appendSliceInBuffer(unsigned int slice_number, MassSpectrum &spectrum, std::size_t ipos)pappso::MsRunXicExtractorDiskBufferprotected
appendSliceOnDisk(unsigned int slice_number, MassSpectrum &spectrum, std::size_t ipos)pappso::MsRunXicExtractorDiskprotected
endPwizRead() overridepappso::MsRunXicExtractorDiskBufferprotectedvirtual
extractOneXicCoord(XicCoord &xic_coord)pappso::MsRunXicExtractorDiskprivate
extractXicCoordSPtrList(UiMonitorInterface &monitor, std::vector< XicCoordSPtr > &xic_coord_list) finalpappso::MsRunXicExtractorInterfacevirtual
extractXicCoordSPtrListParallelized(UiMonitorInterface &monitor, std::vector< XicCoordSPtr > &xic_coord_list) finalpappso::MsRunXicExtractorInterfacevirtual
flushBufferOnDisk()pappso::MsRunXicExtractorDiskBufferprotected
getMsRunId() constpappso::MsRunXicExtractorInterface
getMsRunReaderSPtr() constpappso::MsRunXicExtractorInterface
getXicFromPwizMSDataFile(std::vector< Xic * > &xic_list, const std::vector< MzRange > &mass_range_list, pappso::pappso_double rt_begin, pappso::pappso_double rt_end)pappso::MsRunXicExtractorprotectedvirtual
m_bufferMaxSizepappso::MsRunXicExtractorDiskBufferprotected
m_bufferSizepappso::MsRunXicExtractorDiskBufferprotected
m_maxMzpappso::MsRunXicExtractorDiskprotected
m_minMzpappso::MsRunXicExtractorDiskprotected
m_msrun_pointspappso::MsRunXicExtractorprotected
m_msRunSliceListCachepappso::MsRunXicExtractorDiskprotected
m_mutexpappso::MsRunXicExtractorDiskprotected
m_retentionTimeAroundTargetpappso::MsRunXicExtractorInterfaceprotected
m_retentionTimeListpappso::MsRunXicExtractorDiskprotected
m_rtSizepappso::MsRunXicExtractorDiskprotected
m_sliceBufferMappappso::MsRunXicExtractorDiskBufferprotected
m_temporaryDirectorypappso::MsRunXicExtractorDiskprotected
m_xicExtractMethodpappso::MsRunXicExtractorInterfaceprotected
mcsp_postExtractionTraceFilterpappso::MsRunXicExtractorInterfaceprotected
mpa_temporaryDirectorypappso::MsRunXicExtractorDiskprotected
msp_msrun_readerpappso::MsRunXicExtractorInterfaceprotected
MsRunXicExtractor(const MsRunXicExtractor &other)pappso::MsRunXicExtractor
MsRunXicExtractor(MsRunReaderSPtr &msrun_reader)pappso::MsRunXicExtractorprotected
MsRunXicExtractorDisk(MsRunReaderSPtr &msrun_reader)pappso::MsRunXicExtractorDisk
MsRunXicExtractorDisk(const MsRunXicExtractorDisk &other)pappso::MsRunXicExtractorDisk
MsRunXicExtractorDisk(MsRunReaderSPtr &msrun_reader, const QDir &temporary_dir)pappso::MsRunXicExtractorDiskprotected
MsRunXicExtractorDiskBuffer(const MsRunXicExtractorDiskBuffer &other)pappso::MsRunXicExtractorDiskBuffer
MsRunXicExtractorDiskBuffer(MsRunReaderSPtr &msrun_reader, const QDir &temporary_dir)pappso::MsRunXicExtractorDiskBufferprotected
MsRunXicExtractorFactorypappso::MsRunXicExtractorDiskBufferprivate
MsRunXicExtractorInterface(MsRunReaderSPtr &msrun_reader)pappso::MsRunXicExtractorInterfaceprotected
MsRunXicExtractorInterface(const MsRunXicExtractorInterface &other)pappso::MsRunXicExtractorInterfaceprotected
postExtractionProcess(UiMonitorInterface &monitor, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_begin, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_end)pappso::MsRunXicExtractorInterfaceprotectedvirtual
prepareExtractor()pappso::MsRunXicExtractorDiskprotected
protectedExtractXicCoordSPtrList(UiMonitorInterface &monitor, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_begin, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_end) overridepappso::MsRunXicExtractorDiskprotectedvirtual
serializeMsRun()pappso::MsRunXicExtractorDiskprotected
setPostExtractionTraceFilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter)pappso::MsRunXicExtractorInterface
setRetentionTimeAroundTarget(double range_in_seconds)pappso::MsRunXicExtractorInterface
setXicExtractMethod(XicExtractMethod method)pappso::MsRunXicExtractorInterface
storeSlices(std::map< unsigned int, MassSpectrum > &slice_vector, std::size_t ipos) overridepappso::MsRunXicExtractorDiskBufferprotectedvirtual
unserializeSlice(unsigned int slice_number)pappso::MsRunXicExtractorDiskprotected
~MsRunXicExtractor()pappso::MsRunXicExtractorvirtual
~MsRunXicExtractorDisk()pappso::MsRunXicExtractorDiskvirtual
~MsRunXicExtractorDiskBuffer()pappso::MsRunXicExtractorDiskBuffervirtual
~MsRunXicExtractorInterface()pappso::MsRunXicExtractorInterfaceprotectedvirtual